Motif HL_76371.2 Version HL_76371.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_008 | 4V9F | 0.1296 | 0 | 0 | LSU rRNA | C | 217 | C | 218 | G | 219 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH | ||
| 2 | HL_4WF9_008 | 4WF9 | 0.1048 | 0 | X | LSU rRNA | C | 249 | G | 250 | G | 251 | C | 252 | G | 253 | A | 254 | G | 255 | cWW | ntSH | ||
| 3 | HL_8B0X_040 | 8B0X | 0.1145 | 0 | a | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | ||
| 4 | HL_7A0S_008 | 7A0S | 0.1080 | 0 | X | LSU rRNA | C | 223 | G | 224 | G | 225 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | ntSH | ||
| 5 | HL_9DFE_007 | 9DFE | 0.1014 | 0 | 1A | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | tSH | ||
| 6 | HL_8GLP_003 | 8GLP | 0.0733 | 0 | L5 | LSU rRNA | C | 89 | G | 90 | G | 91 | C | 92 | G | 93 | A | 94 | G | 95 | cWW | tSH | ||
| 7 | HL_9AXU_003 | 9AXU | 0.0870 | 0 | 2 | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | ntSH | ||
| 8 | HL_8OI5_003 | 8OI5 | 0.0971 | 0 | 1 | LSU rRNA | C | 89 | G | 90 | G | 91 | C | 92 | G | 93 | A | 94 | G | 95 | cWW | ntSH | ||
| 9 | HL_8P9A_115 | 8P9A | 0.1218 | 0 | AR | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | ntSH | ||
| 10 | HL_9E6Q_008 | 9E6Q | 0.0000 | 0 | 1 | LSU rRNA | G | 227 | G | 228 | G | 229 | C | 230 | G | 231 | A | 232 | C | 233 | cWW | tSH | ||
| 11 | HL_8P9A_220 | 8P9A | 0.3692 | 0 | GNRA (H) | sR | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ||
| 12 | HL_8GLP_113 | 8GLP | 0.5541 | 0 | GNRA (H) | S2 | SSU rRNA | C | 1460 | G | 1461 | U | 1462 | U | 1463 | C | 1464 | A | 1465 | G | 1466 | cWW | tSH | ncSH |
| 13 | HL_8CRE_221 | 8CRE | 0.5374 | 0 | CM | SSU rRNA | U | 1382 | U | 1383 | U | 1384 | C | 1385 | A | 1386 | A | 1387 | G | 1388 | cWW | tSH | ||
| 14 | HL_9G4R_001 | 9G4R | 0.7910 | 2 | A | RNA (47-MER) | G | 11 | G | 12 | A | 13 | U | 15 | A | 17 | A | 18 | C | 19 | cWW | tSH | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGAG | 8 |
| UUUCAAG | 2 |
| CCGCGAG | 1 |
| GGGCGAC | 1 |
| CGUUCAG | 1 |
| GGAUUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGA | 9 |
| UUCAA | 2 |
| CGCGA | 1 |
| GUUCA | 1 |
| GAUUGAA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (12)
- GNRA (H) (2)
- Basepair signature
- cWW-tSH-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.34 | Max 0.83
Coloring options: