HL_8P8M_012

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

8P8M|1|A|U|545, 8P8M|1|A|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_012 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.1668

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8P8M|1|A|U|541
8P8M|1|A|G|542
8P8M|1|A|C|543
8P8M|1|A|C|544
8P8M|1|A|U|545
8P8M|1|A|C|546
8P8M|1|A|G|547
8P8M|1|A|G|548
8P8M|1|A|U|549
8P8M|1|A|A|550

Current chains

Chain A

25S rRNA

Nearby chains