HL_8P8M_043

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGGUACG

Length

7 nucleotides

Bulged bases

8P8M|1|A|U|2091

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_043 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3412

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8P8M|1|A|C|1951
8P8M|1|A|G|1952
8P8M|1|A|G|1953
8P8M|1|A|U|2091
8P8M|1|A|A|2093
8P8M|1|A|C|2094
8P8M|1|A|G|2095

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A