HL_8P8M_050

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAGUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_050 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.2587

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

8P8M|1|A|U|2436
8P8M|1|A|G|2437
8P8M|1|A|A|2438
8P8M|1|A|A|2439
8P8M|1|A|G|2440
8P8M|1|A|U|2510
8P8M|1|A|A|2511

Current chains

Chain A

25S rRNA

Nearby chains

Chain JV

60S ribosomal protein L15-A

Chain LL

60S ribosomal protein L8-A