HL_8P8N_001
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8P8N|1|A|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P8N_001 not in the Motif Atlas
- Geometric match to HL_5TBW_001
- Geometric discrepancy: 0.0774
- The information below is about HL_5TBW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8P8N|1|A|U|38
8P8N|1|A|A|39
8P8N|1|A|A|40
8P8N|1|A|G|41
8P8N|1|A|C|42
8P8N|1|A|A|43
8P8N|1|A|U|44
8P8N|1|A|A|45
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain RA
- 60S ribosomal protein L28
- Chain RQ
- 60S ribosomal protein L42-A
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