3D structure

PDB id
8P8N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
CCUCAG
Length
6 nucleotides
Bulged bases
8P8N|1|A|C|959, 8P8N|1|A|A|962
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P8N_022 not in the Motif Atlas
Homologous match to HL_5TBW_022
Geometric discrepancy: 0.2311
The information below is about HL_5TBW_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

8P8N|1|A|C|958
8P8N|1|A|C|959
8P8N|1|A|U|960
8P8N|1|A|C|961
8P8N|1|A|A|962
8P8N|1|A|G|963

Current chains

Chain A
25S rRNA

Nearby chains

Chain RA
60S ribosomal protein L28
Chain RB
60S ribosomal protein L29
Chain RQ
60S ribosomal protein L42-A

Coloring options:


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