HL_8P8N_041

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8P8N|1|A|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_041 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0682

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P8N|1|A|U|1862
8P8N|1|A|G|1863
8P8N|1|A|A|1864
8P8N|1|A|A|1865
8P8N|1|A|C|1866
8P8N|1|A|A|1867
8P8N|1|A|G|1868

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A