HL_8P8N_049

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8P8N|1|A|A|2372, 8P8N|1|A|A|2373, 8P8N|1|A|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_049 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0729

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8P8N|1|A|G|2369
8P8N|1|A|G|2370
8P8N|1|A|G|2371
8P8N|1|A|A|2372
8P8N|1|A|A|2373
8P8N|1|A|C|2374
8P8N|1|A|G|2375
8P8N|1|A|G|2376
8P8N|1|A|G|2377
8P8N|1|A|C|2378

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A

Chain LG

60S ribosomal protein L3

Chain RE

60S ribosomal protein L32