HL_8P8N_050

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGAAGUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_050 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.2795

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8P8N|1|A|U|2436
8P8N|1|A|G|2437
8P8N|1|A|A|2438
8P8N|1|A|A|2439
8P8N|1|A|G|2440
8P8N|1|A|U|2510
8P8N|1|A|A|2511

Current chains

Chain A

25S rRNA

Nearby chains

Chain JV

60S ribosomal protein L15-A

Chain LF

60S ribosomal protein L2-A

Chain LL

60S ribosomal protein L8-A