HL_8P8N_061

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8P8N|1|A|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_061 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0871

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8P8N|1|A|A|2897
8P8N|1|A|G|2898
8P8N|1|A|C|2899
8P8N|1|A|A|2900
8P8N|1|A|G|2901
8P8N|1|A|A|2902
8P8N|1|A|A|2903
8P8N|1|A|U|2904

Current chains

Chain A

25S rRNA

Nearby chains

Chain LM

60S ribosomal protein L9-A

Chain RO

Ubiquitin-60S ribosomal protein L40