HL_8P8N_065

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_065 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.0699

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8P8N|1|A|U|3068
8P8N|1|A|G|3069
8P8N|1|A|A|3070
8P8N|1|A|U|3071
8P8N|1|A|C|3072
8P8N|1|A|A|3073

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A

Chain QU

60S ribosomal protein L22-A

Chain RD

60S ribosomal protein L31-A