HL_8P8U_006

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8P8U|1|A|U|210, 8P8U|1|A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0978

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8P8U|1|A|C|208
8P8U|1|A|A|209
8P8U|1|A|U|210
8P8U|1|A|A|211
8P8U|1|A|G|212

Current chains

Chain A

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L4-A

Chain QY

60S ribosomal protein L26-A