HL_8P8U_018

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

8P8U|1|A|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_018 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.1042

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8P8U|1|A|G|763
8P8U|1|A|U|764
8P8U|1|A|C|765
8P8U|1|A|U|766
8P8U|1|A|U|767
8P8U|1|A|C|768

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A