HL_8P8U_023

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GGGGUCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_023 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2876

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8P8U|1|A|G|1018
8P8U|1|A|G|1019
8P8U|1|A|G|1020
8P8U|1|A|G|1021
8P8U|1|A|U|1022
8P8U|1|A|C|1032
8P8U|1|A|U|1033
8P8U|1|A|U|1034

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10