HL_8P8U_072

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8P8U|1|LD|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_072 not in the Motif Atlas

Homologous match to HL_8C3A_077

Geometric discrepancy: 0.1605

The information below is about HL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8P8U|1|LD|G|124
8P8U|1|LD|U|125
8P8U|1|LD|A|126
8P8U|1|LD|U|127
8P8U|1|LD|U|128
8P8U|1|LD|C|129

Current chains

Chain LD

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain QX

60S ribosomal protein L25