HL_8P9A_027

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8P9A|1|1|A|1244, 8P9A|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_027 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.0953

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8P9A|1|1|C|1239
8P9A|1|1|A|1240
8P9A|1|1|U|1241
8P9A|1|1|G|1242
8P9A|1|1|G|1243
8P9A|1|1|A|1244
8P9A|1|1|A|1245
8P9A|1|1|G|1246
8P9A|1|1|U|1247
8P9A|1|1|C|1248
8P9A|1|1|G|1249

Current chains

Chain 1

25S ribosomal RNA

Nearby chains