8P9A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8P9A_001 | 1/1/38:45 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_8P9A_002 | 1/1/69:74 | No text annotation | homologous HL_8P9A_114 HL_53890.2 | |
| HL_8P9A_003 | 1/1/90:96 | No text annotation | homologous HL_8P9A_115 HL_37369.2 | |
| HL_8P9A_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8P9A_005 | 1/1/194:201 | No text annotation | homologous HL_8P9A_117 HL_01609.3 | |
| HL_8P9A_006 | 1/1/208:212 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_8P9A_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8P9A_008 | 1/1/278:287 | T-loop related | homologous HL_8P9A_120 HL_77436.5 | |
| HL_8P9A_009 | 1/1/303:312 | No text annotation | homologous HL_8P9A_121 HL_77600.2 | |
| HL_8P9A_010 | 1/1/357:362 | GNRA | homologous HL_8P9A_122 HL_37824.7 | |
| HL_8P9A_011 | 1/1/382:387 | GNRA | homologous HL_8P9A_123 HL_37824.7 | |
| HL_8P9A_226 | 1/1/543:548 | No text annotation | homologous HL_8P9A_231 HL_13189.1 | |
| HL_8P9A_013 | 1/1/599:604 | GNRA | homologous HL_8P9A_125 HL_37824.7 | |
| HL_8P9A_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_126 HL_28252.8 | |
| HL_8P9A_015 | 1/1/686:694 | No text annotation | homologous HL_8P9A_127 HL_41464.2 | |
| HL_8P9A_016 | 1/1/707:712 | GNRA | homologous HL_8P9A_128 HL_37824.7 | |
| HL_8P9A_017 | 1/1/732:737 | GNRA | homologous HL_8P9A_129 HL_37824.7 | |
| HL_8P9A_018 | 1/1/763:768 | No text annotation | homologous HL_8P9A_130 HL_86870.2 | |
| HL_8P9A_019 | 1/1/844:849 | GNRA | homologous HL_8P9A_131 HL_37824.7 | |
| HL_8P9A_020 | 1/1/876:885 | No text annotation | homologous HL_8P9A_132 HL_88205.2 | |
| HL_8P9A_021 | 1/1/910:918 | No text annotation | homologous HL_8P9A_133 HL_87553.1 | |
| HL_8P9A_022 | 1/1/958:963 | No text annotation | homologous HL_8P9A_134 HL_70782.2 | |
| HL_8P9A_023 | 1/1/1022:1030 | No text annotation | homologous HL_8P9A_135 NA | |
| HL_8P9A_024 | 1/1/1076:1083 | T-loop related | homologous HL_8P9A_136 HL_77436.5 | |
| HL_8P9A_025 | 1/1/1126:1132 | GNRA | homologous HL_8P9A_137 HL_37824.7 | |
| HL_8P9A_026 | 1/1/1148:1155 | No text annotation | homologous HL_8P9A_138 HL_42998.2 | |
| HL_8P9A_027 | 1/1/1239:1249 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_8P9A_028 | 1/1/1347:1357 | No text annotation | homologous HL_8P9A_141 HL_29762.1 | |
| HL_8P9A_029 | 1/1/1403:1408 | GNRA | homologous HL_8P9A_142 HL_37824.7 | |
| HL_8P9A_030 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_143 HL_28252.8 | |
| HL_8P9A_031 | 1/1/1506:1512 | No text annotation | homologous HL_8P9A_144 HL_57176.2 | |
| HL_8P9A_032 | 1/1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8P9A_033 | 1/1/1561:1579 | No text annotation | ||
| HL_8P9A_034 | 1/1/1599:1608 | No text annotation | homologous HL_8P9A_146 HL_81545.2 | |
| HL_8P9A_035 | 1/1/1634:1639 | GNRA | homologous HL_8P9A_147 HL_37824.7 | |
| HL_8P9A_036 | 1/1/1680:1688 | No text annotation | homologous HL_8P9A_148 HL_77082.1 | |
| HL_8P9A_037 | 1/1/1719:1725 | No text annotation | homologous HL_8P9A_149 HL_25967.2 | |
| HL_8P9A_227 | 1/1/1760:1765 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_8P9A_039 | 1/1/1792:1796 | Mini UNCG | homologous HL_8P9A_151 HL_48778.2 | |
| HL_8P9A_040 | 1/1/1844:1851 | No text annotation | homologous HL_8P9A_152 HL_89567.2 | |
| HL_8P9A_041 | 1/1/1862:1868 | GNRA | homologous HL_8P9A_153 HL_37824.7 | |
| HL_8P9A_042 | 1/1/1923:1928 | UNCG | homologous HL_8P9A_154 HL_34617.5 | |
| HL_8P9A_043 | 1/1/1953:2094 | No text annotation | homologous HL_5TBW_044 NA | |
| HL_8P9A_044 | 1/1/2110:2114 | No text annotation | homologous HL_8P9A_156 HL_55195.3 | |
| HL_8P9A_045 | 1/1/2135:2145 | No text annotation | homologous HL_8P9A_157 HL_01962.2 | |
| HL_8P9A_046 | 1/1/2164:2170 | GNRA | homologous HL_8P9A_158 HL_37824.7 | |
| HL_8P9A_047 | 1/1/2220:2225 | GNRA | homologous HL_8P9A_159 HL_37824.7 | |
| HL_8P9A_048 | 1/1/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8P9A_049 | 1/1/2292:2300 | No text annotation | homologous HL_8P9A_161 HL_20167.2 | |
| HL_8P9A_050 | 1/1/2369:2378 | No text annotation | homologous HL_8P9A_162 HL_61996.2 | |
| HL_8P9A_051 | 1/1/2441:2506 | No text annotation | homologous HL_5TBW_052 NA | |
| HL_8P9A_052 | 1/1/2534:2545 | No text annotation | ||
| HL_8P9A_228 | 1/1/2568:2573 | No text annotation | geometric HL_5TBW_053 NA | |
| HL_8P9A_054 | 1/1/2616:2624 | No text annotation | homologous HL_8P9A_165 HL_85367.2 | |
| HL_8P9A_055 | 1/1/2633:2645 | No text annotation | homologous HL_8P9A_166 HL_91939.2 | |
| HL_8P9A_056 | 1/1/2673:2681 | No text annotation | homologous HL_8P9A_167 HL_50860.2 | |
| HL_8P9A_057 | 1/1/2693:2700 | Pseudoknot geometry | homologous HL_8P9A_168 HL_93324.4 | |
| HL_8P9A_058 | 1/1/2724:2732 | No text annotation | homologous HL_8P9A_169 HL_80599.2 | |
| HL_8P9A_059 | 1/1/2744:2749 | GNRA | homologous HL_8P9A_170 HL_37824.7 | |
| HL_8P9A_060 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_8P9A_171 HL_93324.4 | |
| HL_8P9A_061 | 1/1/2840:2848 | No text annotation | homologous HL_8P9A_172 HL_32735.2 | |
| HL_8P9A_062 | 1/1/2897:2904 | No text annotation | homologous HL_8P9A_173 HL_31585.4 | |
| HL_8P9A_063 | 1/1/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_30068.2 | |
| HL_8P9A_064 | 1/1/2963:2968 | GNRA | homologous HL_8P9A_175 HL_37824.7 | |
| HL_8P9A_065 | 1/1/3025:3030 | GNRA | homologous HL_8P9A_176 HL_37824.7 | |
| HL_8P9A_066 | 1/1/3068:3073 | No text annotation | homologous HL_8P9A_177 HL_65794.5 | |
| HL_8P9A_067 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8P9A_068 | 1/1/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_8P9A_069 | 1/1/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_07886.3 | |
| HL_8P9A_070 | 1/1/3303:3311 | No text annotation | homologous HL_8P9A_181 HL_64690.6 | |
| HL_8P9A_071 | 1/1/3350:3353 | Mini UNCG | homologous HL_8P9A_182 HL_48778.2 | |
| HL_8P9A_072 | 1/3/32:45 | No text annotation | geometric HL_5TBW_238 NA | |
| HL_8P9A_073 | 1/3/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8P9A_074 | 1/3/88:93 | GNRA | homologous HL_8P9A_185 HL_37824.7 | |
| HL_8P9A_075 | 1/4/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_8P9A_076 | 1/4/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8P9A_077 | 1/4/108:114 | No text annotation | homologous HL_8P9A_188 HL_53890.2 | |
| HL_8P9A_078 | 1/4/124:129 | No text annotation | homologous HL_8P4V_075 NA | |
| HL_8P9A_079 | 1/A/7:17 | No text annotation | homologous HL_8P9A_190 HL_89881.5 | |
| HL_8P9A_080 | 1/A/70:81 | No text annotation | homologous HL_8P9A_191 HL_81312.1 | |
| HL_8P9A_081 | 1/A/154:160 | GNRA related | homologous HL_8P9A_192 HL_37824.7 | |
| HL_8P9A_229 | 1/A/190:195 | No text annotation | homologous HL_8P9A_193 HL_53890.2 | |
| HL_8P9A_083 | 1/A/243:250 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8P9A_084 | 1/A/274:282 | No text annotation | ||
| HL_8P9A_085 | 1/A/330:338 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8P9A_086 | 1/A/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.1 | |
| HL_8P9A_087 | 1/A/393:404 | No text annotation | homologous HL_8P9A_199 HL_06226.4 | |
| HL_8P9A_088 | 1/A/414:419 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8P9A_089 | 1/A/450:456 | No text annotation | homologous HL_8P9A_201 HL_48417.5 | |
| HL_8P9A_090 | 1/A/485:502 | No text annotation | ||
| HL_8P9A_091 | 1/A/520:532 | No text annotation | homologous HL_8P9A_203 HL_05304.3 | |
| HL_8P9A_092 | 1/A/569:574 | No text annotation | homologous HL_8P9A_204 HL_93535.1 | |
| HL_8P9A_093 | 1/A/703:735 | No text annotation | ||
| HL_8P9A_094 | 1/A/764:772 | No text annotation | homologous HL_8P9A_206 HL_85367.2 | |
| HL_8P9A_230 | 1/A/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.5 | |
| HL_8P9A_096 | 1/A/825:847 | No text annotation | ||
| HL_8P9A_097 | 1/A/900:909 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8P9A_098 | 1/A/937:942 | GNRA | homologous HL_8P9A_210 HL_37824.7 | |
| HL_8P9A_099 | 1/A/997:1007 | No text annotation | homologous HL_8P9A_211 HL_75293.5 | |
| HL_8P9A_100 | 1/A/1055:1064 | No text annotation | homologous HL_8P9A_212 HL_97917.2 | |
| HL_8P9A_101 | 1/A/1084:1089 | GNRA | homologous HL_8P9A_213 HL_37824.7 | |
| HL_8P9A_102 | 1/A/1121:1126 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8P9A_103 | 1/A/1188:1197 | No text annotation | homologous HL_8P9A_215 HL_50779.4 | |
| HL_8P9A_104 | 1/A/1238:1247 | No text annotation | homologous HL_8P9A_216 HL_81538.2 | |
| HL_8P9A_105 | 1/A/1296:1301 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8P9A_106 | 1/A/1309:1316 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8P9A_107 | 1/A/1359:1364 | No text annotation | homologous HL_8P9A_219 HL_38901.2 | |
| HL_8P9A_108 | 1/A/1396:1402 | No text annotation | homologous HL_8P9A_220 HL_37369.2 | |
| HL_8P9A_109 | 1/A/1501:1506 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8P9A_110 | 1/A/1550:1561 | No text annotation | homologous HL_8P9A_222 HL_67079.1 | |
| HL_8P9A_111 | 1/A/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_8P9A_112 | 1/A/1778:1783 | GNRA variation | homologous HL_8P9A_225 HL_37824.7 | |
| HL_8P9A_113 | 1/AR/38:45 | No text annotation HL_30068.2 | ||
| HL_8P9A_114 | 1/AR/69:74 | No text annotation HL_53890.2 | ||
| HL_8P9A_115 | 1/AR/90:96 | No text annotation HL_37369.2 | ||
| HL_8P9A_116 | 1/AR/132:136 | No text annotation HL_32346.4 | ||
| HL_8P9A_117 | 1/AR/194:201 | T-loop with 2 stacked bulged bases HL_01609.3 | ||
| HL_8P9A_118 | 1/AR/208:212 | No text annotation HL_75660.5 | ||
| HL_8P9A_119 | 1/AR/216:224 | T-loop with unstacked turn HL_27670.2 | ||
| HL_8P9A_120 | 1/AR/278:287 | T-loop related HL_77436.5 | ||
| HL_8P9A_121 | 1/AR/303:312 | Pseudoknot geometry HL_77600.2 | ||
| HL_8P9A_122 | 1/AR/357:362 | GNRA HL_37824.7 | ||
| HL_8P9A_123 | 1/AR/382:387 | GNRA HL_37824.7 | ||
| HL_8P9A_231 | 1/AR/543:548 | No text annotation HL_13189.1 | ||
| HL_8P9A_125 | 1/AR/599:604 | GNRA HL_37824.7 | ||
| HL_8P9A_126 | 1/AR/640:649 | T-loop with 2 stacked bulged bases HL_28252.8 | ||
| HL_8P9A_127 | 1/AR/686:694 | No text annotation HL_41464.2 | ||
| HL_8P9A_128 | 1/AR/707:712 | GNRA HL_37824.7 | ||
| HL_8P9A_129 | 1/AR/732:737 | GNRA HL_37824.7 | ||
| HL_8P9A_130 | 1/AR/763:768 | No text annotation HL_86870.2 | ||
| HL_8P9A_131 | 1/AR/844:849 | GNRA HL_37824.7 | ||
| HL_8P9A_132 | 1/AR/876:885 | No text annotation HL_88205.2 | ||
| HL_8P9A_133 | 1/AR/910:918 | No text annotation HL_87553.1 | ||
| HL_8P9A_134 | 1/AR/958:963 | Externally structured HL_70782.2 | ||
| HL_8P9A_232 | 1/AR/1023:1029 | GNRA HL_37824.7 | ||
| HL_8P9A_136 | 1/AR/1076:1083 | T-loop related HL_77436.5 | ||
| HL_8P9A_137 | 1/AR/1126:1132 | GNRA HL_37824.7 | ||
| HL_8P9A_138 | 1/AR/1148:1155 | No text annotation HL_42998.2 | ||
| HL_8P9A_139 | 1/AR/1239:1249 | No text annotation HL_19210.3 | ||
| HL_8P9A_140 | 1/AR/1267:1274 | GNRA wlth tandem sheared HL_81538.2 | ||
| HL_8P9A_141 | 1/AR/1347:1357 | No text annotation HL_29762.1 | ||
| HL_8P9A_142 | 1/AR/1403:1408 | GNRA HL_37824.7 | ||
| HL_8P9A_143 | 1/AR/1462:1470 | T-loop with 2 stacked bulged bases HL_28252.8 | ||
| HL_8P9A_144 | 1/AR/1506:1512 | Pseudoknot geometry with 3' bulge HL_57176.2 | ||
| HL_8P9A_145 | 1/AR/1544:1549 | GNRA variation HL_37824.7 | ||
| HL_8P9A_146 | 1/AR/1599:1608 | No text annotation HL_81545.2 | ||
| HL_8P9A_147 | 1/AR/1634:1639 | GNRA HL_37824.7 | ||
| HL_8P9A_148 | 1/AR/1680:1688 | No text annotation HL_77082.1 | ||
| HL_8P9A_149 | 1/AR/1719:1725 | No text annotation HL_25967.2 | ||
| HL_8P9A_150 | 1/AR/1759:1766 | No text annotation HL_25967.2 | ||
| HL_8P9A_151 | 1/AR/1792:1796 | Mini UNCG HL_48778.2 | ||
| HL_8P9A_152 | 1/AR/1844:1851 | No text annotation HL_89567.2 | ||
| HL_8P9A_153 | 1/AR/1862:1868 | GNRA HL_37824.7 | ||
| HL_8P9A_154 | 1/AR/1923:1928 | UNCG HL_34617.5 | ||
| HL_8P9A_156 | 1/AR/2110:2114 | No text annotation HL_55195.3 | ||
| HL_8P9A_157 | 1/AR/2135:2145 | No text annotation HL_01962.2 | ||
| HL_8P9A_158 | 1/AR/2164:2170 | GNRA HL_37824.7 | ||
| HL_8P9A_159 | 1/AR/2220:2225 | GNRA HL_37824.7 | ||
| HL_8P9A_160 | 1/AR/2252:2264 | No text annotation HL_70658.1 | ||
| HL_8P9A_161 | 1/AR/2292:2300 | No text annotation HL_20167.2 | ||
| HL_8P9A_162 | 1/AR/2369:2378 | No text annotation HL_61996.2 | ||
| HL_8P9A_163 | 1/AR/2534:2545 | No text annotation HL_23509.1 | ||
| HL_8P9A_233 | 1/AR/2567:2574 | No text annotation HL_37344.1 | ||
| HL_8P9A_165 | 1/AR/2616:2624 | No text annotation HL_85367.2 | ||
| HL_8P9A_166 | 1/AR/2633:2645 | No text annotation HL_91939.2 | ||
| HL_8P9A_167 | 1/AR/2673:2681 | No text annotation HL_50860.2 | ||
| HL_8P9A_168 | 1/AR/2693:2700 | Pseudoknot geometry HL_93324.4 | ||
| HL_8P9A_169 | 1/AR/2724:2732 | No text annotation HL_80599.2 | ||
| HL_8P9A_170 | 1/AR/2744:2749 | GNRA HL_37824.7 | ||
| HL_8P9A_171 | 1/AR/2776:2784 | Pseudoknot geometry HL_93324.4 | ||
| HL_8P9A_172 | 1/AR/2840:2848 | No text annotation HL_32735.2 | ||
| HL_8P9A_173 | 1/AR/2897:2904 | No text annotation HL_31585.4 | ||
| HL_8P9A_174 | 1/AR/2920:2926 | No text annotation HL_30068.2 | ||
| HL_8P9A_175 | 1/AR/2963:2968 | GNRA HL_37824.7 | ||
| HL_8P9A_176 | 1/AR/3025:3030 | GNRA HL_37824.7 | ||
| HL_8P9A_177 | 1/AR/3068:3073 | Ribsomal LSU H95 HL_65794.5 | ||
| HL_8P9A_178 | 1/AR/3110:3124 | No text annotation HL_74055.2 | ||
| HL_8P9A_179 | 1/AR/3193:3199 | No text annotation HL_08100.1 | ||
| HL_8P9A_180 | 1/AR/3240:3247 | No text annotation HL_07886.3 | ||
| HL_8P9A_181 | 1/AR/3303:3311 | No text annotation HL_64690.6 | ||
| HL_8P9A_182 | 1/AR/3350:3353 | Mini UNCG HL_48778.2 | ||
| HL_8P9A_183 | 1/AS/32:45 | No text annotation HL_13971.1 | ||
| HL_8P9A_184 | 1/AS/36:41 | No text annotation HL_47787.2 | ||
| HL_8P9A_185 | 1/AS/88:93 | GNRA HL_37824.7 | ||
| HL_8P9A_186 | 1/AT/47:56 | Pseudoknot with intercalation HL_93438.2 | ||
| HL_8P9A_187 | 1/AT/69:89 | No text annotation HL_51921.1 | ||
| HL_8P9A_188 | 1/AT/108:114 | No text annotation HL_53890.2 | ||
| HL_8P9A_189 | 1/AT/124:129 | No text annotation HL_86883.1 | ||
| HL_8P9A_190 | 1/sR/7:17 | No text annotation HL_89881.5 | ||
| HL_8P9A_191 | 1/sR/70:81 | No text annotation HL_81312.1 | ||
| HL_8P9A_192 | 1/sR/154:160 | GNRA related HL_37824.7 | ||
| HL_8P9A_193 | 1/sR/190:195 | No text annotation HL_53890.2 | ||
| HL_8P9A_194 | 1/sR/230:235 | No text annotation HL_53890.2 | ||
| HL_8P9A_195 | 1/sR/243:250 | T-loop with 1 bulged base HL_77436.5 | ||
| HL_8P9A_196 | 1/sR/276:279 | Mini UNCG HL_48778.2 | ||
| HL_8P9A_197 | 1/sR/330:338 | GNRA related HL_84299.4 | ||
| HL_8P9A_198 | 1/sR/368:373 | No text annotation HL_93535.1 | ||
| HL_8P9A_199 | 1/sR/393:404 | No text annotation HL_06226.4 | ||
| HL_8P9A_200 | 1/sR/414:419 | UNCG HL_34617.5 | ||
| HL_8P9A_201 | 1/sR/450:456 | No text annotation HL_48417.5 | ||
| HL_8P9A_234 | 1/sR/486:501 | No text annotation HL_64292.1 | ||
| HL_8P9A_203 | 1/sR/520:532 | No text annotation HL_05304.3 | ||
| HL_8P9A_204 | 1/sR/569:574 | GNRA variation HL_93535.1 | ||
| HL_8P9A_235 | 1/sR/715:723 | No text annotation HL_20535.2 | ||
| HL_8P9A_206 | 1/sR/764:772 | No text annotation HL_85367.2 | ||
| HL_8P9A_207 | 1/sR/777:783 | No text annotation HL_48417.5 | ||
| HL_8P9A_236 | 1/sR/829:843 | Pseudoknot geometry HL_88364.2 | ||
| HL_8P9A_209 | 1/sR/900:909 | No text annotation HL_75293.5 | ||
| HL_8P9A_210 | 1/sR/937:942 | GNRA HL_37824.7 | ||
| HL_8P9A_211 | 1/sR/997:1007 | No text annotation HL_75293.5 | ||
| HL_8P9A_212 | 1/sR/1055:1064 | No text annotation HL_97917.2 | ||
| HL_8P9A_213 | 1/sR/1084:1089 | GNRA HL_37824.7 | ||
| HL_8P9A_214 | 1/sR/1121:1126 | GNRA HL_37824.7 | ||
| HL_8P9A_215 | 1/sR/1188:1197 | No text annotation HL_50779.4 | ||
| HL_8P9A_216 | 1/sR/1238:1247 | Anticodon loop related HL_81538.2 | ||
| HL_8P9A_217 | 1/sR/1296:1301 | GNRA HL_37824.7 | ||
| HL_8P9A_218 | 1/sR/1309:1316 | T-loop related HL_77436.5 | ||
| HL_8P9A_219 | 1/sR/1359:1364 | No text annotation HL_38901.2 | ||
| HL_8P9A_220 | 1/sR/1396:1402 | GNRA HL_37369.2 | ||
| HL_8P9A_221 | 1/sR/1501:1506 | GNRA HL_37824.7 | ||
| HL_8P9A_222 | 1/sR/1550:1561 | No text annotation HL_67079.1 | ||
| HL_8P9A_224 | 1/sR/1691:1710 | No text annotation HL_89346.1 | ||
| HL_8P9A_225 | 1/sR/1778:1783 | GNRA variation HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8P9A_012 | No text annotation | ||
| HL_8P9A_038 | No text annotation | ||
| HL_8P9A_053 | No text annotation | ||
| HL_8P9A_082 | No text annotation | ||
| HL_8P9A_095 | No text annotation | ||
| HL_8P9A_124 | No text annotation | ||
| HL_8P9A_135 | No text annotation | ||
| HL_8P9A_155 | No text annotation | ||
| HL_8P9A_164 | No text annotation | ||
| HL_8P9A_202 | No text annotation | ||
| HL_8P9A_205 | No text annotation | ||
| HL_8P9A_208 | No text annotation | ||
| HL_8P9A_223 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8P9A_001 | 1/1/7:8, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8P9A_002 | 1/1/13:15, 1/4/144:145 | Single bulged U | homologous IL_8P9A_232 IL_89505.4 | |
| IL_8P9A_003 | 1/1/31:38, 1/1/45:53 | No text annotation | homologous IL_8P9A_234 IL_84694.2 | |
| IL_8P9A_004 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8P9A_235 IL_65594.1 | |
| IL_8P9A_005 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8P9A_006 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8P9A_007 | 1/1/163:165, 1/1/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
| IL_8P9A_008 | 1/1/169:170, 1/1/248:253 | No text annotation | geometric IL_5TBW_010 NA | |
| IL_8P9A_009 | 1/1/177:178, 1/1/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_8P9A_010 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8P9A_241 IL_89505.4 | |
| IL_8P9A_011 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_8P9A_242 IL_31462.6 | |
| IL_8P9A_012 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8P9A_013 | 1/1/404:410, 1/4/13:19 | No text annotation | homologous IL_8P9A_244 IL_04021.2 | |
| IL_8P9A_014 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_07785.1 | |
| IL_8P9A_015 | 1/1/435:495, 1/1/618:624 | Kink-turn related | geometric IL_5TBW_017 NA | |
| IL_8P9A_016 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8P9A_246 IL_31462.6 | |
| IL_8P9A_017 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_8P9A_247 IL_58126.1 | |
| IL_8P9A_018 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_8P9A_248 IL_43858.1 | |
| IL_8P9A_019 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8P9A_020 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_8P9A_250 IL_74367.1 | |
| IL_8P9A_021 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8P9A_251 IL_23774.1 | |
| IL_8P9A_022 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8P9A_023 | 1/1/755:756, 1/1/775:777 | Single bulged U | homologous IL_8P9A_253 IL_89505.4 | |
| IL_8P9A_024 | 1/1/758:763, 1/1/768:773 | No text annotation | homologous IL_8P9A_254 IL_85536.2 | |
| IL_8P9A_025 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_87907.2 | |
| IL_8P9A_026 | 1/1/805:809, 1/1/931:938 | No text annotation | homologous IL_8P9A_256 IL_54041.2 | |
| IL_8P9A_027 | 1/1/833:834, 1/1/859:861 | Single bulged G | homologous IL_8P9A_257 IL_00225.13 | |
| IL_8P9A_028 | 1/1/834:838, 1/1/855:859 | No text annotation | homologous IL_8P9A_258 IL_50730.2 | |
| IL_8P9A_029 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8P9A_030 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_8P9A_260 IL_89505.4 | |
| IL_8P9A_031 | 1/1/907:909, 1/1/919:923 | No text annotation | homologous IL_8P9A_261 IL_06549.2 | |
| IL_8P9A_032 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_28037.2 | |
| IL_8P9A_033 | 1/1/969:970, 1/1/1111:1113 | Single stack bend | homologous IL_8P9A_263 IL_26793.1 | |
| IL_8P9A_034 | 1/1/977:981, 1/1/1102:1104 | No text annotation | homologous IL_8P9A_264 IL_25463.1 | |
| IL_8P9A_035 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8P9A_265 IL_00225.13 | |
| IL_8P9A_036 | 1/1/991:997, 1/1/1052:1058 | No text annotation | homologous IL_8P9A_266 IL_29198.2 | |
| IL_8P9A_037 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform | homologous IL_8P9A_267 IL_51454.3 | |
| IL_8P9A_038 | 1/1/999:1004, 1/1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8P9A_039 | 1/1/1006:1009, 1/1/1041:1044 | No text annotation | homologous IL_8P9A_269 IL_77658.1 | |
| IL_8P9A_040 | 1/1/1009:1011, 1/1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_87907.2 | |
| IL_8P9A_041 | 1/1/1014:1018, 1/1/1034:1036 | No text annotation | homologous IL_8P9A_271 IL_11415.1 | |
| IL_8P9A_042 | 1/1/1069:1072, 1/1/1086:1089 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_8P9A_043 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A | homologous IL_8P9A_273 IL_31462.6 | |
| IL_8P9A_044 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_8P9A_046 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation | homologous IL_8P9A_276 IL_38507.2 | |
| IL_8P9A_047 | 1/1/1173:1180, 1/1/1325:1326 | No text annotation | homologous IL_8P9A_277 IL_41203.4 | |
| IL_8P9A_048 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_89505.4 | |
| IL_8P9A_049 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8P9A_279 IL_77278.1 | |
| IL_8P9A_050 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | homologous IL_8P9A_280 IL_83149.1 | |
| IL_8P9A_051 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8P9A_281 IL_89505.4 | |
| IL_8P9A_052 | 1/1/1218:1226, 1/1/1283:1287 | No text annotation | homologous IL_8P9A_282 IL_99692.2 | |
| IL_8P9A_053 | 1/1/1230:1234, 1/1/1254:1279 | No text annotation | ||
| IL_8P9A_054 | 1/1/1230:1238, 1/1/1250:1279 | No text annotation | ||
| IL_8P9A_055 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
| IL_8P9A_056 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8P9A_285 IL_42997.3 | |
| IL_8P9A_057 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8P9A_286 IL_31462.6 | |
| IL_8P9A_058 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8P9A_287 IL_70923.9 | |
| IL_8P9A_059 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_31462.6 | |
| IL_8P9A_060 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8P9A_289 IL_26307.2 | |
| IL_8P9A_061 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_8P9A_062 | 1/1/1532:1536, 1/1/1585:1590 | No text annotation | homologous IL_8P9A_291 IL_38507.2 | |
| IL_8P9A_063 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | homologous IL_8P9A_292 IL_15698.3 | |
| IL_8P9A_064 | 1/1/1623:1624, 1/1/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.6 | |
| IL_8P9A_065 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_8P9A_066 | 1/1/1645:1649, 1/1/1806:1810 | No text annotation | homologous IL_8P9A_295 IL_50730.2 | |
| IL_8P9A_067 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8P9A_296 IL_87907.2 | |
| IL_8P9A_068 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_61258.15 | |
| IL_8P9A_069 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8P9A_070 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_8P9A_299 IL_00981.1 | |
| IL_8P9A_071 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_23038.1 | |
| IL_8P9A_072 | 1/1/1711:1717, 1/1/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_69543.3 | |
| IL_8P9A_073 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8P9A_302 IL_22829.2 | |
| IL_8P9A_074 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8P9A_303 IL_67095.2 | |
| IL_8P9A_075 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_8P9A_076 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | geometric IL_5TBW_474 NA | |
| IL_8P9A_077 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation | homologous IL_8P9A_306 IL_76758.2 | |
| IL_8P9A_078 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8P9A_307 IL_47346.2 | |
| IL_8P9A_079 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8P9A_308 IL_87907.2 | |
| IL_8P9A_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_73355.1 | |
| IL_8P9A_081 | 1/1/1949:1953, 1/1/2094:2097 | No text annotation | ||
| IL_8P9A_082 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8P9A_083 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8P9A_084 | 1/1/2196:2199, 1/1/2245:2246 | Minor groove platform, major groove intercalation | homologous IL_8P9A_312 IL_95583.2 | |
| IL_8P9A_085 | 1/1/2200:2201, 1/1/2241:2244 | Major groove intercalation | homologous IL_8P9A_313 IL_82107.4 | |
| IL_8P9A_086 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U | homologous IL_8P9A_314 IL_89505.4 | |
| IL_8P9A_087 | 1/1/2206:2210, 1/1/2235:2237 | No text annotation | homologous IL_8P9A_315 IL_36516.3 | |
| IL_8P9A_088 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation | homologous IL_8P9A_316 IL_88116.2 | |
| IL_8P9A_089 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8P9A_090 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | homologous IL_8P9A_318 IL_42218.2 | |
| IL_8P9A_091 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | homologous IL_8P9A_319 IL_55516.2 | |
| IL_8P9A_092 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8P9A_093 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_8P9A_321 IL_89505.4 | |
| IL_8P9A_094 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_8P9A_322 IL_51454.3 | |
| IL_8P9A_095 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation | homologous IL_8P9A_323 IL_85599.2 | |
| IL_8P9A_096 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8P9A_097 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_31462.6 | |
| IL_8P9A_098 | 1/1/2666:2668, 1/1/2686:2690 | No text annotation | homologous IL_8P9A_326 IL_61476.2 | |
| IL_8P9A_099 | 1/1/2718:2721, 1/1/2735:2738 | No text annotation | homologous IL_8P9A_327 IL_85033.2 | |
| IL_8P9A_100 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge | homologous IL_8P9A_328 IL_90729.1 | |
| IL_8P9A_101 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform | homologous IL_8P9A_329 IL_48076.6 | |
| IL_8P9A_102 | 1/1/2824:2826, 1/1/2863:2865 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_87907.2 | |
| IL_8P9A_103 | 1/1/2826:2828, 1/1/2862:2863 | No text annotation | homologous IL_8P9A_331 IL_07039.3 | |
| IL_8P9A_104 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation | homologous IL_8P9A_332 IL_51387.2 | |
| IL_8P9A_105 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation | homologous IL_8P9A_333 IL_17948.2 | |
| IL_8P9A_106 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8P9A_107 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation | homologous IL_8P9A_335 IL_07785.1 | |
| IL_8P9A_108 | 1/1/2881:2882, 1/1/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8P9A_109 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_8P9A_110 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | geometric IL_5TBW_475 NA | |
| IL_8P9A_111 | 1/1/2891:2892, 1/1/2909:2912 | No text annotation | homologous IL_8P9A_339 IL_02555.1 | |
| IL_8P9A_112 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_87907.2 | |
| IL_8P9A_113 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A | geometric IL_7A0S_002 IL_31462.6 | |
| IL_8P9A_114 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8P9A_342 IL_09705.15 | |
| IL_8P9A_115 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8P9A_116 | 1/1/3018:3025, 1/1/3030:3036 | No text annotation | homologous IL_8P9A_344 IL_04346.10 | |
| IL_8P9A_117 | 1/1/3047:3051, 1/1/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_83150.2 | |
| IL_8P9A_118 | 1/1/3054:3059, 1/1/3084:3088 | No text annotation | homologous IL_8P9A_346 IL_21001.1 | |
| IL_8P9A_119 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_8P9A_120 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation | homologous IL_8P9A_348 IL_38507.2 | |
| IL_8P9A_121 | 1/1/3163:3166, 1/1/3284:3287 | No text annotation | geometric IL_5TBW_504 NA | |
| IL_8P9A_122 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_28037.2 | |
| IL_8P9A_123 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | homologous IL_8P9A_351 IL_31462.6 | |
| IL_8P9A_124 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_8P9A_125 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8P9A_126 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_8P9A_353 IL_82741.2 | |
| IL_8P9A_127 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_87907.2 | |
| IL_8P9A_128 | 1/1/3235:3238, 1/1/3249:3252 | No text annotation | homologous IL_8P9A_355 IL_77658.1 | |
| IL_8P9A_129 | 1/1/3300:3303, 1/1/3311:3314 | No text annotation | homologous IL_8P9A_356 IL_77658.1 | |
| IL_8P9A_130 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_8P9A_131 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8P9A_359 IL_43622.1 | |
| IL_8P9A_132 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8P9A_360 IL_70411.2 | |
| IL_8P9A_133 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8P9A_134 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | homologous IL_8P9A_362 IL_09705.15 | |
| IL_8P9A_135 | 1/1/3348:3350, 1/1/3353:3357 | Isolated non-canonical cWW pair | geometric IL_6CZR_118 NA | |
| IL_8P9A_136 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_8P9A_364 IL_31462.6 | |
| IL_8P9A_137 | 1/3/21:27, 1/3/53:58 | No text annotation | homologous IL_8P9A_365 IL_18487.1 | |
| IL_8P9A_138 | 1/3/28:29, 1/3/49:52 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
| IL_8P9A_139 | 1/3/29:30, 1/3/47:49 | Single stack bend | homologous IL_8P9A_367 IL_90729.1 | |
| IL_8P9A_140 | 1/3/32:36, 1/3/41:45 | No text annotation | homologous IL_8P9A_368 IL_58103.11 | |
| IL_8P9A_141 | 1/3/72:80, 1/3/100:106 | No text annotation | homologous IL_8P9A_369 IL_04346.10 | |
| IL_8P9A_142 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | homologous IL_8P9A_370 IL_87907.2 | |
| IL_8P9A_143 | 1/4/64:66, 1/4/93:96 | No text annotation | homologous IL_8P4V_144 NA | |
| IL_8P9A_144 | 1/4/68:69, 1/4/89:91 | Single bulged U | homologous IL_8P4V_145 NA | |
| IL_8P9A_145 | 1/A/24:26, 1/A/600:601 | Single bulged C | homologous IL_8P9A_373 IL_61258.15 | |
| IL_8P9A_146 | 1/A/35:37, 1/A/471:473 | Isolated non-canonical cWW pair | homologous IL_8P9A_374 IL_87907.2 | |
| IL_8P9A_147 | 1/A/37:41, 1/A/466:471 | No text annotation | homologous IL_8P9A_375 IL_12697.1 | |
| IL_8P9A_148 | 1/A/42:48, 1/A/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8P9A_149 | 1/A/50:52, 1/A/428:429 | Minor groove platform | homologous IL_8P9A_377 IL_51454.3 | |
| IL_8P9A_150 | 1/A/58:63, 1/A/87:89 | No text annotation | homologous IL_8P9A_378 IL_61299.4 | |
| IL_8P9A_151 | 1/A/64:69, 1/A/82:86 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
| IL_8P9A_152 | 1/A/109:112, 1/A/302:305 | No text annotation | homologous IL_8P9A_380 IL_77658.1 | |
| IL_8P9A_153 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8P9A_154 | 1/A/117:122, 1/A/295:299 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_8P9A_155 | 1/A/143:149, 1/A/165:172 | No text annotation | homologous IL_8P9A_383 IL_80604.6 | |
| IL_8P9A_156 | 1/A/150:152, 1/A/162:164 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_8P9A_157 | 1/A/186:189, 1/A/196:199 | Double sheared | homologous IL_8P9A_385 IL_09705.15 | |
| IL_8P9A_158 | 1/A/204:206, 1/A/259:263 | No text annotation | homologous IL_8P9A_386 IL_51387.2 | |
| IL_8P9A_159 | 1/A/206:208, 1/A/257:259 | Isolated non-canonical cWW pair | homologous IL_8P9A_387 IL_28037.2 | |
| IL_8P9A_160 | 1/A/265:267, 1/A/288:289 | Single bulged A | homologous IL_8P9A_388 IL_31462.6 | |
| IL_8P9A_161 | 1/A/270:273, 1/A/283:285 | No text annotation | homologous IL_8P9A_389 IL_15698.3 | |
| IL_8P9A_162 | 1/A/311:316, 1/A/348:355 | No text annotation | homologous IL_8P9A_391 IL_46174.3 | |
| IL_8P9A_163 | 1/A/318:323, 1/A/345:346 | No text annotation | homologous IL_8P9A_392 IL_47074.2 | |
| IL_8P9A_164 | 1/A/363:365, 1/A/376:381 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8P9A_165 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair | homologous IL_8P9A_394 IL_10167.6 | |
| IL_8P9A_166 | 1/A/411:413, 1/A/420:422 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8P9A_167 | 1/A/439:441, 1/A/463:464 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_8P9A_168 | 1/A/443:447, 1/A/460:461 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_8P9A_169 | 1/A/447:448, 1/A/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_8P9A_170 | 1/A/517:518, 1/A/533:535 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8P9A_171 | 1/A/518:520, 1/A/532:533 | Minor groove platform | homologous IL_8P9A_401 IL_51454.3 | |
| IL_8P9A_172 | 1/A/550:557, 1/A/587:588 | No text annotation | homologous IL_8P9A_402 IL_41203.4 | |
| IL_8P9A_173 | 1/A/557:559, 1/A/586:587 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8P9A_174 | 1/A/562:568, 1/A/575:583 | No text annotation | homologous IL_8P9A_404 IL_54177.4 | |
| IL_8P9A_175 | 1/A/616:622, 1/A/1104:1105 | No text annotation | homologous IL_8P9A_405 IL_38186.6 | |
| IL_8P9A_176 | 1/A/624:626, 1/A/973:975 | Isolated non-canonical cWW pair | homologous IL_8P9A_406 IL_87907.2 | |
| IL_8P9A_177 | 1/A/627:631, 1/A/968:972 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8P9A_178 | 1/A/646:648, 1/A/686:688 | No text annotation | homologous IL_8P9A_408 IL_44465.1 | |
| IL_8P9A_465 | 1/A/746:747, 1/A/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8P9A_180 | 1/A/748:750, 1/A/799:801 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_28037.2 | |
| IL_8P9A_181 | 1/A/751:759, 1/A/791:798 | No text annotation | homologous IL_8P9A_414 IL_59049.1 | |
| IL_8P9A_182 | 1/A/817:822, 1/A/850:854 | Triple non-canonical cWW pairs | geometric IL_8SP9_002 IL_49751.4 | |
| IL_8P9A_184 | 1/A/865:866, 1/A/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_8P9A_185 | 1/A/868:870, 1/A/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_8P9A_186 | 1/A/871:874, 1/A/953:956 | No text annotation | homologous IL_8P9A_419 IL_85033.2 | |
| IL_8P9A_187 | 1/A/874:878, 1/A/950:953 | No text annotation | homologous IL_8P9A_420 IL_85033.2 | |
| IL_8P9A_188 | 1/A/885:888, 1/A/924:927 | No text annotation | homologous IL_8P9A_421 IL_85033.2 | |
| IL_8P9A_189 | 1/A/893:899, 1/A/910:919 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_8P9A_190 | 1/A/985:990, 1/A/1014:1016 | No text annotation | homologous IL_8P9A_423 IL_97273.1 | |
| IL_8P9A_191 | 1/A/990:994, 1/A/1010:1014 | No text annotation | homologous IL_8P9A_424 IL_17136.7 | |
| IL_8P9A_192 | 1/A/1034:1036, 1/A/1095:1101 | No text annotation | homologous IL_8P9A_425 IL_82706.1 | |
| IL_8P9A_193 | 1/A/1041:1044, 1/A/1074:1077 | No text annotation | homologous IL_8P9A_426 IL_85033.2 | |
| IL_8P9A_194 | 1/A/1049:1053, 1/A/1066:1069 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_8P9A_195 | 1/A/1111:1118, 1/A/1129:1134 | No text annotation | homologous IL_8P9A_428 IL_41756.4 | |
| IL_8P9A_196 | 1/A/1146:1147, 1/A/1630:1632 | Single bulged A | homologous IL_8P9A_429 IL_31462.6 | |
| IL_8P9A_197 | 1/A/1149:1151, 1/A/1627:1628 | Single bulged G | homologous IL_8P9A_430 IL_00225.13 | |
| IL_8P9A_198 | 1/A/1157:1160, 1/A/1617:1621 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8P9A_199 | 1/A/1173:1175, 1/A/1464:1466 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_87907.2 | |
| IL_8P9A_200 | 1/A/1178:1179, 1/A/1459:1461 | Minor groove platform | homologous IL_8P9A_433 IL_51454.3 | |
| IL_8P9A_201 | 1/A/1213:1215, 1/A/1448:1450 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8P9A_202 | 1/A/1224:1230, 1/A/1257:1259 | No text annotation | ||
| IL_8P9A_203 | 1/A/1224:1233, 1/A/1252:1259 | No text annotation | ||
| IL_8P9A_204 | 1/A/1230:1233, 1/A/1252:1257 | No text annotation | ||
| IL_8P9A_205 | 1/A/1234:1236, 1/A/1249:1251 | No text annotation | homologous IL_8P9A_436 IL_14688.1 | |
| IL_8P9A_206 | 1/A/1268:1270, 1/A/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8P9A_207 | 1/A/1272:1278, 1/A/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_8P9A_209 | 1/A/1290:1292, 1/A/1323:1325 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8P9A_210 | 1/A/1306:1308, 1/A/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8P9A_211 | 1/A/1339:1342, 1/A/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_87907.2 | |
| IL_8P9A_212 | 1/A/1345:1348, 1/A/1377:1380 | No text annotation | homologous IL_8P9A_445 IL_78800.1 | |
| IL_8P9A_213 | 1/A/1352:1354, 1/A/1369:1373 | No text annotation | homologous IL_8C3A_464 NA | |
| IL_8P9A_214 | 1/A/1389:1391, 1/A/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_8P9A_466 | 1/A/1480:1487, 1/A/1519:1527 | No text annotation | homologous IL_8P9A_448 IL_91698.1 | |
| IL_8P9A_216 | 1/A/1488:1494, 1/A/1513:1518 | No text annotation | homologous IL_8P9A_449 IL_22564.1 | |
| IL_8P9A_217 | 1/A/1495:1498, 1/A/1509:1512 | No text annotation | homologous IL_8P9A_450 IL_77658.1 | |
| IL_8P9A_218 | 1/A/1540:1545, 1/A/1566:1571 | No text annotation | homologous IL_8P9A_451 IL_85536.2 | |
| IL_8P9A_219 | 1/A/1636:1638, 1/A/1764:1767 | No text annotation | homologous IL_8C3A_470 NA | |
| IL_8P9A_220 | 1/A/1638:1641, 1/A/1760:1764 | No text annotation | homologous IL_8P9A_453 IL_65718.4 | |
| IL_8P9A_221 | 1/A/1642:1644, 1/A/1757:1759 | Isolated non-canonical cWW pair | homologous IL_8P9A_454 IL_87907.2 | |
| IL_8P9A_222 | 1/A/1644:1647, 1/A/1753:1757 | No text annotation | homologous IL_8P9A_455 IL_64231.5 | |
| IL_8P9A_223 | 1/A/1650:1652, 1/A/1748:1750 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8P9A_224 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared | homologous IL_8P9A_457 IL_09705.15 | |
| IL_8P9A_225 | 1/A/1656:1658, 1/A/1743:1744 | Single bulged U | homologous IL_8P9A_458 IL_89505.4 | |
| IL_8P9A_226 | 1/A/1665:1667, 1/A/1734:1736 | Isolated non-canonical cWW pair | homologous IL_8P9A_459 IL_07785.1 | |
| IL_8P9A_227 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared | homologous IL_8P9A_460 IL_09705.15 | |
| IL_8P9A_228 | 1/A/1672:1674, 1/A/1727:1729 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_87907.2 | |
| IL_8P9A_229 | 1/A/1675:1678, 1/A/1723:1726 | No text annotation | homologous IL_8P9A_462 IL_77658.1 | |
| IL_8P9A_230 | 1/A/1678:1682, 1/A/1719:1723 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_8P9A_231 | 1/AR/7:8, 1/AT/150:152 | Single bulged C IL_61258.15 | ||
| IL_8P9A_232 | 1/AR/13:15, 1/AT/144:145 | Single bulged U IL_89505.4 | ||
| IL_8P9A_233 | 1/AR/27:28, 1/AR/56:58 | Single stack bend IL_90729.1 | ||
| IL_8P9A_234 | 1/AR/31:38, 1/AR/45:53 | tSH-tHW-tHH-tHS IL_84694.2 | ||
| IL_8P9A_235 | 1/AR/82:89, 1/AR/97:103 | 8x7 Sarcin-Ricin; G-bulge IL_65594.1 | ||
| IL_8P9A_236 | 1/AR/123:124, 1/AR/144:149 | No text annotation IL_92634.2 | ||
| IL_8P9A_237 | 1/AR/125:127, 1/AR/141:143 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_238 | 1/AR/163:165, 1/AR/257:258 | Single stack bend IL_90729.1 | ||
| IL_8P9A_239 | 1/AR/169:173, 1/AR/245:253 | No text annotation IL_13358.1 | ||
| IL_8P9A_467 | 1/AR/175:178, 1/AR/238:243 | No text annotation IL_07469.2 | ||
| IL_8P9A_241 | 1/AR/189:191, 1/AR/204:205 | Single bulged U IL_89505.4 | ||
| IL_8P9A_242 | 1/AR/337:339, 1/AT/25:26 | Single bulged A IL_31462.6 | ||
| IL_8P9A_243 | 1/AR/376:379, 1/AR/390:403 | No text annotation IL_81516.2 | ||
| IL_8P9A_244 | 1/AR/404:410, 1/AT/13:19 | Triple sheared with non-canonical cWW IL_04021.2 | ||
| IL_8P9A_245 | 1/AR/429:431, 1/AR/628:630 | Isolated non-canonical cWW pair IL_07785.1 | ||
| IL_8P9A_246 | 1/AR/512:513, 1/AR/577:579 | Single bulged A IL_31462.6 | ||
| IL_8P9A_247 | 1/AR/517:525, 1/AR/567:573 | No text annotation IL_58126.1 | ||
| IL_8P9A_248 | 1/AR/531:538, 1/AR/553:561 | No text annotation IL_43858.1 | ||
| IL_8P9A_249 | 1/AR/668:670, 1/AR/792:794 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_250 | 1/AR/680:684, 1/AR/696:700 | No text annotation IL_74367.1 | ||
| IL_8P9A_251 | 1/AR/725:728, 1/AR/741:745 | UAA/GAN IL_23774.1 | ||
| IL_8P9A_252 | 1/AR/752:753, 1/AR/779:781 | Single bulged A IL_31462.6 | ||
| IL_8P9A_253 | 1/AR/755:756, 1/AR/775:777 | Single bulged U IL_89505.4 | ||
| IL_8P9A_254 | 1/AR/758:763, 1/AR/768:773 | No text annotation IL_85536.2 | ||
| IL_8P9A_255 | 1/AR/803:805, 1/AR/938:940 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_256 | 1/AR/805:809, 1/AR/931:938 | tHW-tHW cross-strand stack IL_54041.2 | ||
| IL_8P9A_257 | 1/AR/833:834, 1/AR/859:861 | Single bulged G IL_00225.13 | ||
| IL_8P9A_258 | 1/AR/834:838, 1/AR/855:859 | Triple sheared IL_50730.2 | ||
| IL_8P9A_259 | 1/AR/869:872, 1/AR/888:890 | Major groove platform with extra cWW IL_51387.2 | ||
| IL_8P9A_260 | 1/AR/873:875, 1/AR/886:887 | Single bulged U IL_89505.4 | ||
| IL_8P9A_261 | 1/AR/907:909, 1/AR/919:923 | Multiple bulged bases IL_06549.2 | ||
| IL_8P9A_262 | 1/AR/954:956, 1/AR/965:967 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_8P9A_263 | 1/AR/969:970, 1/AR/1111:1113 | Single stack bend IL_26793.1 | ||
| IL_8P9A_264 | 1/AR/977:981, 1/AR/1102:1104 | 180 degree turn IL_25463.1 | ||
| IL_8P9A_265 | 1/AR/983:985, 1/AR/1099:1100 | Single bulged G IL_00225.13 | ||
| IL_8P9A_266 | 1/AR/991:997, 1/AR/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge IL_29198.2 | ||
| IL_8P9A_267 | 1/AR/997:998, 1/AR/1050:1052 | Minor groove platform IL_51454.3 | ||
| IL_8P9A_268 | 1/AR/999:1004, 1/AR/1046:1049 | C-loop IL_26222.2 | ||
| IL_8P9A_269 | 1/AR/1006:1009, 1/AR/1041:1044 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_270 | 1/AR/1009:1011, 1/AR/1039:1041 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_271 | 1/AR/1014:1018, 1/AR/1034:1036 | No text annotation IL_11415.1 | ||
| IL_8P9A_272 | 1/AR/1069:1071, 1/AR/1087:1089 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_273 | 1/AR/1074:1076, 1/AR/1083:1084 | Single bulged A IL_31462.6 | ||
| IL_8P9A_274 | 1/AR/1120:1122, 1/AR/1136:1138 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_276 | 1/AR/1167:1171, 1/AR/1328:1332 | UAA/GAN IL_38507.2 | ||
| IL_8P9A_277 | 1/AR/1173:1180, 1/AR/1325:1326 | SSU/LSU pseudoknot IL_41203.4 | ||
| IL_8P9A_278 | 1/AR/1180:1182, 1/AR/1324:1325 | Single bulged U IL_89505.4 | ||
| IL_8P9A_279 | 1/AR/1187:1194, 1/AR/1314:1319 | No text annotation IL_77278.1 | ||
| IL_8P9A_280 | 1/AR/1194:1205, 1/AR/1299:1314 | No text annotation IL_83149.1 | ||
| IL_8P9A_281 | 1/AR/1207:1209, 1/AR/1296:1297 | Single bulged U IL_89505.4 | ||
| IL_8P9A_282 | 1/AR/1218:1226, 1/AR/1283:1287 | Kink-turn IL_99692.2 | ||
| IL_8P9A_283 | 1/AR/1234:1238, 1/AR/1250:1254 | No text annotation IL_16218.2 | ||
| IL_8P9A_284 | 1/AR/1262:1266, 1/AR/1275:1277 | Major groove platform with extra cWW IL_51387.2 | ||
| IL_8P9A_285 | 1/AR/1376:1378, 1/AR/1428:1431 | No text annotation IL_42997.3 | ||
| IL_8P9A_286 | 1/AR/1385:1387, 1/AR/1420:1421 | Single bulged A IL_31462.6 | ||
| IL_8P9A_287 | 1/AR/1388:1395, 1/AR/1415:1419 | Kink-turn IL_70923.9 | ||
| IL_8P9A_288 | 1/AR/1398:1400, 1/AR/1411:1412 | Single bulged A IL_31462.6 | ||
| IL_8P9A_289 | 1/AR/1444:1450, 1/AR/2354:2359 | 7x6 Sarcin-Ricin; G-bulge IL_26307.2 | ||
| IL_8P9A_290 | 1/AR/1501:1505, 1/AR/1513:1515 | C-loop IL_63596.11 | ||
| IL_8P9A_291 | 1/AR/1532:1536, 1/AR/1585:1590 | UAA/GAN IL_38507.2 | ||
| IL_8P9A_292 | 1/AR/1618:1621, 1/AR/1824:1826 | Other IL IL_15698.3 | ||
| IL_8P9A_293 | 1/AR/1623:1624, 1/AR/1819:1822 | Major groove platform related IL_48076.6 | ||
| IL_8P9A_294 | 1/AR/1627:1631, 1/AR/1811:1816 | No text annotation IL_56317.1 | ||
| IL_8P9A_295 | 1/AR/1645:1649, 1/AR/1806:1810 | Triple sheared IL_50730.2 | ||
| IL_8P9A_296 | 1/AR/1661:1663, 1/AR/1786:1788 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_297 | 1/AR/1669:1670, 1/AR/1778:1780 | Single bulged C IL_61258.15 | ||
| IL_8P9A_298 | 1/AR/1670:1671, 1/AR/1776:1778 | Single stack bend IL_90729.1 | ||
| IL_8P9A_299 | 1/AR/1694:1698, 1/AR/1747:1752 | No text annotation IL_00981.1 | ||
| IL_8P9A_300 | 1/AR/1702:1707, 1/AR/1737:1743 | No text annotation IL_23038.1 | ||
| IL_8P9A_301 | 1/AR/1711:1717, 1/AR/1727:1733 | Kink-turn IL_69543.3 | ||
| IL_8P9A_302 | 1/AR/1883:1889, 1/AR/2346:2349 | No text annotation IL_22829.2 | ||
| IL_8P9A_303 | 1/AR/1895:1897, 1/AR/2338:2340 | No text annotation IL_67095.2 | ||
| IL_8P9A_304 | 1/AR/1898:1901, 1/AR/2336:2337 | Major groove platform; stack outside cWW IL_50694.7 | ||
| IL_8P9A_305 | 1/AR/1898:1906, 1/AR/2333:2337 | No text annotation IL_22854.4 | ||
| IL_8P9A_306 | 1/AR/1901:1906, 1/AR/2333:2336 | No text annotation IL_76758.2 | ||
| IL_8P9A_307 | 1/AR/1918:1923, 1/AR/1928:1934 | tSH-tSH-tHH-tHS IL_47346.2 | ||
| IL_8P9A_308 | 1/AR/1940:1942, 1/AR/2106:2108 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_309 | 1/AR/1947:1948, 1/AR/2098:2101 | No text annotation IL_73355.1 | ||
| IL_8P9A_310 | 1/AR/2128:2129, 1/AR/2323:2325 | Single bulged A IL_31462.6 | ||
| IL_8P9A_311 | 1/AR/2156:2161, 1/AR/2173:2180 | Kink-turn related IL_20047.1 | ||
| IL_8P9A_312 | 1/AR/2196:2199, 1/AR/2245:2246 | Minor groove platform, major groove intercalation IL_95583.2 | ||
| IL_8P9A_313 | 1/AR/2200:2201, 1/AR/2241:2244 | Major groove intercalation IL_82107.4 | ||
| IL_8P9A_314 | 1/AR/2204:2206, 1/AR/2237:2238 | Single bulged U IL_89505.4 | ||
| IL_8P9A_315 | 1/AR/2206:2210, 1/AR/2235:2237 | Major groove platform with extra pair IL_36516.3 | ||
| IL_8P9A_316 | 1/AR/2211:2217, 1/AR/2228:2234 | No text annotation IL_88116.2 | ||
| IL_8P9A_317 | 1/AR/2276:2277, 1/AR/2307:2310 | No text annotation IL_22551.4 | ||
| IL_8P9A_318 | 1/AR/2277:2288, 1/AR/2304:2307 | No text annotation IL_42218.2 | ||
| IL_8P9A_319 | 1/AR/2391:2394, 1/AR/2986:2988 | Major groove platform with extra pair IL_55516.2 | ||
| IL_8P9A_320 | 1/AR/2396:2398, 1/AR/2981:2984 | Major groove platform with intercalation IL_83389.2 | ||
| IL_8P9A_321 | 1/AR/2409:2411, 1/AR/2811:2812 | Single bulged U IL_89505.4 | ||
| IL_8P9A_322 | 1/AR/2412:2413, 1/AR/2807:2810 | Minor groove platform IL_51454.3 | ||
| IL_8P9A_323 | 1/AR/2423:2425, 1/AR/2604:2607 | Isolated tHS basepair with bulges IL_85599.2 | ||
| IL_8P9A_324 | 1/AR/2520:2526, 1/AR/2584:2587 | No text annotation IL_00555.1 | ||
| IL_8P9A_325 | 1/AR/2614:2615, 1/AR/2625:2627 | Single bulged A IL_31462.6 | ||
| IL_8P9A_326 | 1/AR/2666:2668, 1/AR/2686:2690 | Isolated tHS basepair with bulges IL_61476.2 | ||
| IL_8P9A_327 | 1/AR/2718:2721, 1/AR/2735:2738 | Tandem non-canonical cWW pairs IL_85033.2 | ||
| IL_8P9A_328 | 1/AR/2770:2773, 1/AR/2787:2788 | Single stack bend with bulge IL_90729.1 | ||
| IL_8P9A_329 | 1/AR/2823:2824, 1/AR/2865:2867 | Major groove platform IL_48076.6 | ||
| IL_8P9A_330 | 1/AR/2824:2826, 1/AR/2863:2865 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_331 | 1/AR/2826:2828, 1/AR/2862:2863 | Major groove platform IL_07039.3 | ||
| IL_8P9A_332 | 1/AR/2828:2830, 1/AR/2858:2862 | Major groove minor groove platform with extra cWW IL_51387.2 | ||
| IL_8P9A_333 | 1/AR/2835:2839, 1/AR/2849:2853 | Triple sheared IL_17948.2 | ||
| IL_8P9A_334 | 1/AR/2876:2877, 1/AR/2949:2951 | Major groove platform IL_07039.3 | ||
| IL_8P9A_335 | 1/AR/2879:2881, 1/AR/2943:2947 | Isolated non-canonical cWW with bulges IL_07785.1 | ||
| IL_8P9A_336 | 1/AR/2881:2882, 1/AR/2940:2943 | Multiple bulged bases IL_42626.2 | ||
| IL_8P9A_337 | 1/AR/2889:2891, 1/AR/2912:2914 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_338 | 1/AR/2889:2892, 1/AR/2909:2914 | No text annotation IL_07469.2 | ||
| IL_8P9A_339 | 1/AR/2891:2892, 1/AR/2909:2912 | Major groove platform with intercalation IL_02555.1 | ||
| IL_8P9A_340 | 1/AR/2918:2920, 1/AR/2926:2928 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_341 | 1/AR/2960:2961, 1/AR/2970:2972 | Single bulged A IL_31462.6 | ||
| IL_8P9A_342 | 1/AR/3004:3007, 1/AR/3139:3144 | Double sheared IL_09705.15 | ||
| IL_8P9A_343 | 1/AR/3012:3014, 1/AR/3040:3042 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_8P9A_344 | 1/AR/3018:3025, 1/AR/3030:3036 | 8x7 Sarcin-Ricin; G-bulge IL_04346.10 | ||
| IL_8P9A_345 | 1/AR/3047:3051, 1/AR/3091:3094 | Major groove minor groove platform with tHH IL_83150.2 | ||
| IL_8P9A_346 | 1/AR/3054:3059, 1/AR/3084:3088 | UAA/GAN related IL_21001.1 | ||
| IL_8P9A_348 | 1/AR/3103:3107, 1/AR/3127:3131 | UAA/GAN IL_38507.2 | ||
| IL_8P9A_349 | 1/AR/3162:3166, 1/AR/3284:3288 | Partly complementary IL_49751.4 | ||
| IL_8P9A_350 | 1/AR/3168:3170, 1/AR/3280:3282 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_8P9A_351 | 1/AR/3177:3179, 1/AR/3210:3211 | Single bulged A IL_31462.6 | ||
| IL_8P9A_352 | 1/AR/3179:3188, 1/AR/3204:3210 | No text annotation IL_42231.1 | ||
| IL_8P9A_353 | 1/AR/3225:3229, 1/AR/3258:3260 | No text annotation IL_82741.2 | ||
| IL_8P9A_354 | 1/AR/3233:3235, 1/AR/3252:3254 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_355 | 1/AR/3235:3238, 1/AR/3249:3252 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_356 | 1/AR/3300:3303, 1/AR/3311:3314 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_357 | 1/AR/3318:3320, 1/AR/3387:3388 | Single bulged U IL_89505.4 | ||
| IL_8P9A_358 | 1/AR/3324:3325, 1/AR/3381:3383 | Single bulged U IL_89505.4 | ||
| IL_8P9A_359 | 1/AR/3328:3330, 1/AR/3373:3378 | Isolated non-canonical cWW pair IL_43622.1 | ||
| IL_8P9A_360 | 1/AR/3332:3337, 1/AR/3367:3371 | No text annotation IL_70411.2 | ||
| IL_8P9A_361 | 1/AR/3340:3342, 1/AR/3363:3364 | Single bulged U IL_89505.4 | ||
| IL_8P9A_362 | 1/AR/3342:3345, 1/AR/3360:3363 | Double sheared; A in syn IL_09705.15 | ||
| IL_8P9A_363 | 1/AR/3349:3350, 1/AR/3353:3356 | Multiple bulged bases IL_84476.1 | ||
| IL_8P9A_364 | 1/AS/15:16, 1/AS/63:65 | Single bulged A IL_31462.6 | ||
| IL_8P9A_365 | 1/AS/21:27, 1/AS/53:58 | Minor groove platform related IL_18487.1 | ||
| IL_8P9A_366 | 1/AS/28:29, 1/AS/49:52 | Minor groove platform IL_15052.4 | ||
| IL_8P9A_367 | 1/AS/29:30, 1/AS/47:49 | Single stack bend IL_90729.1 | ||
| IL_8P9A_368 | 1/AS/32:36, 1/AS/41:45 | Symmetric double minor groove platform IL_58103.11 | ||
| IL_8P9A_369 | 1/AS/72:80, 1/AS/100:106 | 8x7 Sarcin-Ricin; G-bulge IL_04346.10 | ||
| IL_8P9A_370 | 1/AS/84:87, 1/AS/94:96 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_371 | 1/AT/64:66, 1/AT/93:96 | No text annotation IL_07785.1 | ||
| IL_8P9A_372 | 1/AT/68:69, 1/AT/89:91 | Single bulged U IL_89505.4 | ||
| IL_8P9A_373 | 1/sR/24:26, 1/sR/600:601 | Single bulged C IL_61258.15 | ||
| IL_8P9A_374 | 1/sR/35:37, 1/sR/471:473 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_375 | 1/sR/37:41, 1/sR/466:471 | Triple sheared related IL_12697.1 | ||
| IL_8P9A_376 | 1/sR/42:48, 1/sR/431:433 | No text annotation IL_88082.1 | ||
| IL_8P9A_377 | 1/sR/50:52, 1/sR/428:429 | Minor groove platform IL_51454.3 | ||
| IL_8P9A_378 | 1/sR/58:63, 1/sR/87:89 | No text annotation IL_61299.4 | ||
| IL_8P9A_379 | 1/sR/64:69, 1/sR/82:86 | No text annotation IL_21667.1 | ||
| IL_8P9A_380 | 1/sR/109:112, 1/sR/302:305 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_381 | 1/sR/113:116, 1/sR/300:301 | Multiple bulged bases IL_82107.4 | ||
| IL_8P9A_382 | 1/sR/117:122, 1/sR/295:299 | No text annotation IL_29223.1 | ||
| IL_8P9A_383 | 1/sR/143:149, 1/sR/165:172 | tWH-tWH-tHW-tHW IL_80604.6 | ||
| IL_8P9A_384 | 1/sR/150:152, 1/sR/162:164 | Isolated non-canonical cWW contact IL_44465.1 | ||
| IL_8P9A_385 | 1/sR/186:189, 1/sR/196:199 | Double sheared IL_09705.15 | ||
| IL_8P9A_386 | 1/sR/204:206, 1/sR/259:263 | Major groove platform with extra cWW IL_51387.2 | ||
| IL_8P9A_387 | 1/sR/206:208, 1/sR/257:259 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_8P9A_388 | 1/sR/265:267, 1/sR/288:289 | Single bulged A IL_31462.6 | ||
| IL_8P9A_389 | 1/sR/270:273, 1/sR/283:285 | No text annotation IL_15698.3 | ||
| IL_8P9A_390 | 1/sR/275:276, 1/sR/279:281 | Single bulged U IL_89505.4 | ||
| IL_8P9A_391 | 1/sR/311:316, 1/sR/348:355 | Kink-turn with non-sequential stacking IL_46174.3 | ||
| IL_8P9A_392 | 1/sR/318:323, 1/sR/345:346 | No text annotation IL_47074.2 | ||
| IL_8P9A_393 | 1/sR/363:365, 1/sR/376:381 | No text annotation IL_73789.1 | ||
| IL_8P9A_394 | 1/sR/389:391, 1/sR/406:408 | Isolated cWH basepair IL_10167.6 | ||
| IL_8P9A_395 | 1/sR/411:413, 1/sR/420:422 | Isolated near basepair IL_42997.3 | ||
| IL_8P9A_396 | 1/sR/439:441, 1/sR/463:464 | Single bulged U IL_89505.4 | ||
| IL_8P9A_397 | 1/sR/443:447, 1/sR/460:461 | No text annotation IL_03109.3 | ||
| IL_8P9A_398 | 1/sR/447:448, 1/sR/458:460 | Single bulged G IL_00225.13 | ||
| IL_8P9A_399 | 1/sR/481:482, 1/sR/505:507 | Single bulged A IL_31462.6 | ||
| IL_8P9A_400 | 1/sR/516:518, 1/sR/533:536 | No text annotation IL_90351.1 | ||
| IL_8P9A_401 | 1/sR/518:520, 1/sR/532:533 | Minor groove platform IL_51454.3 | ||
| IL_8P9A_402 | 1/sR/550:557, 1/sR/587:588 | SSU/LSU pseudoknot IL_41203.4 | ||
| IL_8P9A_403 | 1/sR/557:559, 1/sR/586:587 | Single bulged U IL_89505.4 | ||
| IL_8P9A_404 | 1/sR/562:568, 1/sR/575:583 | Kink-turn related IL_54177.4 | ||
| IL_8P9A_405 | 1/sR/616:622, 1/sR/1104:1105 | No text annotation IL_38186.6 | ||
| IL_8P9A_406 | 1/sR/624:626, 1/sR/973:975 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_407 | 1/sR/627:631, 1/sR/968:972 | tSH-tHW-tHS IL_17136.7 | ||
| IL_8P9A_408 | 1/sR/646:648, 1/sR/686:688 | Isolated non-canonical cWW pair IL_44465.1 | ||
| IL_8P9A_409 | 1/sR/649:655, 1/sR/675:685 | No text annotation IL_73002.1 | ||
| IL_8P9A_410 | 1/sR/703:708, 1/sR/730:735 | Triple sheared related IL_85536.2 | ||
| IL_8P9A_411 | 1/sR/709:712, 1/sR/726:729 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_412 | 1/sR/746:747, 1/sR/802:805 | Major groove minor groove platform; mini C-loop IL_68140.4 | ||
| IL_8P9A_413 | 1/sR/748:750, 1/sR/799:801 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_8P9A_414 | 1/sR/751:759, 1/sR/791:798 | No text annotation IL_59049.1 | ||
| IL_8P9A_415 | 1/sR/819:822, 1/sR/850:852 | Isolated non-canonical cWW pair IL_07785.1 | ||
| IL_8P9A_417 | 1/sR/865:866, 1/sR/962:965 | Major groove platform; stack outside cWW IL_50694.7 | ||
| IL_8P9A_418 | 1/sR/868:870, 1/sR/957:960 | Isolated non-canonical cWW pair IL_57744.1 | ||
| IL_8P9A_419 | 1/sR/871:874, 1/sR/953:956 | Tandem non-canonical cWW pairs IL_85033.2 | ||
| IL_8P9A_420 | 1/sR/874:878, 1/sR/950:953 | Tandem non-canonical cWW pairs IL_85033.2 | ||
| IL_8P9A_421 | 1/sR/885:888, 1/sR/924:927 | Tandem non-canonical cWW pairs IL_85033.2 | ||
| IL_8P9A_422 | 1/sR/893:899, 1/sR/910:919 | No text annotation IL_57741.1 | ||
| IL_8P9A_423 | 1/sR/985:990, 1/sR/1014:1016 | Other IL IL_97273.1 | ||
| IL_8P9A_424 | 1/sR/990:994, 1/sR/1010:1014 | tSH-tHW-tHS IL_17136.7 | ||
| IL_8P9A_425 | 1/sR/1034:1036, 1/sR/1095:1101 | No text annotation IL_82706.1 | ||
| IL_8P9A_426 | 1/sR/1041:1044, 1/sR/1074:1077 | Tandem non-canonical cWW pairs IL_85033.2 | ||
| IL_8P9A_427 | 1/sR/1051:1053, 1/sR/1066:1067 | Single bulged U IL_89505.4 | ||
| IL_8P9A_428 | 1/sR/1111:1118, 1/sR/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge IL_41756.4 | ||
| IL_8P9A_429 | 1/sR/1146:1147, 1/sR/1630:1632 | Single bulged A IL_31462.6 | ||
| IL_8P9A_430 | 1/sR/1149:1151, 1/sR/1627:1628 | Single bulged G IL_00225.13 | ||
| IL_8P9A_431 | 1/sR/1157:1160, 1/sR/1617:1621 | C-loop IL_63596.11 | ||
| IL_8P9A_432 | 1/sR/1173:1175, 1/sR/1464:1466 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_433 | 1/sR/1178:1179, 1/sR/1459:1461 | Minor groove platform IL_51454.3 | ||
| IL_8P9A_434 | 1/sR/1213:1215, 1/sR/1448:1450 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_470 | 1/sR/1224:1233, 1/sR/1252:1259 | Kink-turn IL_28304.1 | ||
| IL_8P9A_436 | 1/sR/1234:1236, 1/sR/1249:1251 | No text annotation IL_14688.1 | ||
| IL_8P9A_437 | 1/sR/1268:1270, 1/sR/1440:1441 | Single bulged U IL_89505.4 | ||
| IL_8P9A_438 | 1/sR/1272:1276, 1/sR/1436:1438 | Isolated cWS basepair IL_76319.5 | ||
| IL_8P9A_439 | 1/sR/1272:1278, 1/sR/1430:1438 | No text annotation IL_86012.1 | ||
| IL_8P9A_440 | 1/sR/1276:1278, 1/sR/1430:1436 | Minor groove platform with extra cWW IL_49061.1 | ||
| IL_8P9A_441 | 1/sR/1280:1281, 1/sR/1426:1428 | Single bulged A IL_31462.6 | ||
| IL_8P9A_442 | 1/sR/1290:1292, 1/sR/1323:1325 | Isolated cWH basepair IL_10167.6 | ||
| IL_8P9A_443 | 1/sR/1306:1308, 1/sR/1317:1318 | Minor groove platform IL_51454.3 | ||
| IL_8P9A_444 | 1/sR/1339:1342, 1/sR/1383:1385 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_445 | 1/sR/1345:1348, 1/sR/1377:1380 | Minor groove platform IL_78800.1 | ||
| IL_8P9A_471 | 1/sR/1352:1354, 1/sR/1369:1373 | Isolated non-canonical cWW pair IL_07785.1 | ||
| IL_8P9A_447 | 1/sR/1389:1391, 1/sR/1407:1412 | Major groove platform; stack outside cWW IL_94684.1 | ||
| IL_8P9A_448 | 1/sR/1480:1487, 1/sR/1519:1527 | No text annotation IL_91698.1 | ||
| IL_8P9A_449 | 1/sR/1488:1494, 1/sR/1513:1518 | 180 degree turn IL_22564.1 | ||
| IL_8P9A_450 | 1/sR/1495:1498, 1/sR/1509:1512 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_451 | 1/sR/1540:1545, 1/sR/1566:1571 | No text annotation IL_85536.2 | ||
| IL_8P9A_452 | 1/sR/1636:1638, 1/sR/1764:1767 | No text annotation IL_61438.4 | ||
| IL_8P9A_453 | 1/sR/1638:1641, 1/sR/1760:1764 | No text annotation IL_65718.4 | ||
| IL_8P9A_454 | 1/sR/1642:1644, 1/sR/1757:1759 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_455 | 1/sR/1644:1647, 1/sR/1753:1757 | Non canonical cWW and near pair IL_64231.5 | ||
| IL_8P9A_456 | 1/sR/1650:1652, 1/sR/1748:1750 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_457 | 1/sR/1653:1656, 1/sR/1744:1747 | Double sheared IL_09705.15 | ||
| IL_8P9A_458 | 1/sR/1656:1658, 1/sR/1743:1744 | Single bulged U IL_89505.4 | ||
| IL_8P9A_459 | 1/sR/1665:1667, 1/sR/1734:1736 | Isolated non-canonical cWW pair IL_07785.1 | ||
| IL_8P9A_460 | 1/sR/1669:1672, 1/sR/1729:1732 | Double sheared IL_09705.15 | ||
| IL_8P9A_461 | 1/sR/1672:1674, 1/sR/1727:1729 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8P9A_462 | 1/sR/1675:1678, 1/sR/1723:1726 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_8P9A_463 | 1/sR/1678:1682, 1/sR/1719:1723 | Triple sheared IL_50730.2 | ||
| IL_8P9A_464 | 1/sR/1688:1690, 1/sR/1711:1713 | Isolated tWW contact IL_10167.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8P9A_045 | No text annotation | ||
| IL_8P9A_179 | Major groove minor groove platform with extra cWW | ||
| IL_8P9A_183 | Isolated cWH basepair | ||
| IL_8P9A_208 | Single bulged A | ||
| IL_8P9A_215 | No text annotation | ||
| IL_8P9A_240 | No text annotation | ||
| IL_8P9A_275 | No text annotation | ||
| IL_8P9A_347 | Multiple bulged bases | ||
| IL_8P9A_468 | Tandem non-canonical cWW pairs | ||
| IL_8P9A_416 | No text annotation | ||
| IL_8P9A_469 | Isolated non-canonical cWW pair | ||
| IL_8P9A_435 | No text annotation | ||
| IL_8P9A_446 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8P9A_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_8P9A_002 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_8P9A_003 | 1/1/185:189, 1/1/205:214, 1/1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_8P9A_004 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8P9A_005 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8P9A_006 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_8P9A_007 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
| J3_8P9A_008 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_8P9A_049 J3_64189.2 | |
| J3_8P9A_009 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8P9A_010 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_8P9A_011 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_8P9A_053 J3_19545.2 | |
| J3_8P9A_012 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_8P9A_054 J3_19545.2 | |
| J3_8P9A_013 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_8P9A_014 | 1/1/1537:1542, 1/1/1551:1561, 1/1/1579:1584 | No text annotation | ||
| J3_8P9A_085 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8P9A_087 J3_75962.2 | |
| J3_8P9A_016 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8P9A_017 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_8P9A_059 J3_84052.1 | |
| J3_8P9A_018 | 1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581 | No text annotation | ||
| J3_8P9A_019 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_8P9A_020 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_8P9A_062 J3_61124.2 | |
| J3_8P9A_021 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8P9A_063 J3_62630.1 | |
| J3_8P9A_022 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8P9A_023 | 1/1/3298:3300, 1/1/3314:3320, 1/1/3387:3390 | No text annotation | geometric J3_5TBW_069 NA | |
| J3_8P9A_024 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_8P9A_025 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8P4V_024 NA | |
| J3_8P9A_026 | 1/A/41:42, 1/A/433:439, 1/A/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8P9A_027 | 1/A/41:48, 1/A/431:439, 1/A/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8P9A_028 | 1/A/633:635, 1/A/861:865, 1/A/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8P9A_029 | 1/A/633:635, 1/A/861:866, 1/A/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8P9A_030 | 1/A/760:763, 1/A/773:775, 1/A/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.1 | |
| J3_8P9A_031 | 1/A/881:884, 1/A/928:936, 1/A/943:947 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_8P9A_032 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation | homologous J3_8P9A_075 J3_94999.1 | |
| J3_8P9A_033 | 1/A/1161:1164, 1/A/1581:1587, 1/A/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8P9A_034 | 1/A/1168:1171, 1/A/1468:1470, 1/A/1574:1577 | No text annotation | homologous J3_8P9A_077 J3_52655.4 | |
| J3_8P9A_035 | 1/A/1180:1187, 1/A/1198:1209, 1/A/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8P9A_036 | 1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8P9A_086 | 1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_8P9A_038 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8P9A_039 | 1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415 | No text annotation | geometric J3_4V88_040 NA | |
| J3_8P9A_040 | 1/A/1336:1338, 1/A/1386:1391, 1/A/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8P9A_041 | 1/A/1470:1474, 1/A/1533:1540, 1/A/1571:1574 | No text annotation | homologous J3_8P9A_084 J3_37047.6 | |
| J3_8P9A_042 | 1/AR/113:123, 1/AR/149:158, 1/AR/263:267 | No text annotation J3_19664.1 | ||
| J3_8P9A_043 | 1/AR/113:124, 1/AR/144:158, 1/AR/263:267 | No text annotation J3_58429.1 | ||
| J3_8P9A_044 | 1/AR/185:189, 1/AR/205:214, 1/AR/226:231 | No text annotation J3_75408.1 | ||
| J3_8P9A_045 | 1/AR/340:356, 1/AR/363:368, 1/AT/21:24 | No text annotation J3_30040.2 | ||
| J3_8P9A_046 | 1/AR/369:376, 1/AR/403:404, 1/AT/19:20 | No text annotation J3_60031.2 | ||
| J3_8P9A_047 | 1/AR/369:379, 1/AR/390:404, 1/AT/19:20 | No text annotation J3_92134.2 | ||
| J3_8P9A_048 | 1/AR/502:503, 1/AR/588:597, 1/AR/606:611 | No text annotation J3_83726.1 | ||
| J3_8P9A_049 | 1/AR/814:820, 1/AR/905:907, 1/AR/923:926 | No text annotation J3_64189.2 | ||
| J3_8P9A_050 | 1/AR/828:831, 1/AR/863:867, 1/AR/892:897 | No text annotation J3_21998.1 | ||
| J3_8P9A_051 | 1/AR/986:987, 1/AR/1062:1066, 1/AR/1092:1098 | No text annotation J3_09667.1 | ||
| J3_8P9A_052 | 1/AR/1230:1232, 1/AR/1256:1262, 1/AR/1277:1279 | No text annotation J3_28621.5 | ||
| J3_8P9A_053 | 1/AR/1479:1485, 1/AR/1857:1859, 1/AR/1871:1874 | No text annotation J3_19545.2 | ||
| J3_8P9A_054 | 1/AR/1488:1491, 1/AR/1837:1843, 1/AR/1852:1854 | No text annotation J3_19545.2 | ||
| J3_8P9A_055 | 1/AR/1526:1531, 1/AR/1591:1595, 1/AR/1612:1613 | No text annotation J3_31965.2 | ||
| J3_8P9A_056 | 1/AR/1537:1542, 1/AR/1551:1563, 1/AR/1577:1584 | No text annotation J3_38098.1 | ||
| J3_8P9A_087 | 1/AR/1631:1632, 1/AR/1641:1645, 1/AR/1810:1811 | No text annotation J3_75962.2 | ||
| J3_8P9A_058 | 1/AR/1654:1658, 1/AR/1791:1792, 1/AR/1796:1801 | No text annotation J3_12393.2 | ||
| J3_8P9A_059 | 1/AR/2432:2435, 1/AR/2512:2517, 1/AR/2590:2597 | No text annotation J3_84052.1 | ||
| J3_8P9A_060 | 1/AR/2529:2532, 1/AR/2547:2563, 1/AR/2578:2581 | No text annotation J3_28639.1 | ||
| J3_8P9A_061 | 1/AR/2651:2653, 1/AR/2754:2765, 1/AR/2793:2798 | No text annotation J3_20992.1 | ||
| J3_8P9A_062 | 1/AR/2664:2666, 1/AR/2690:2692, 1/AR/2701:2706 | No text annotation J3_61124.2 | ||
| J3_8P9A_063 | 1/AR/2886:2889, 1/AR/2914:2916, 1/AR/2930:2936 | No text annotation J3_62630.1 | ||
| J3_8P9A_064 | 1/AR/3171:3176, 1/AR/3212:3220, 1/AR/3265:3279 | No text annotation J3_03190.1 | ||
| J3_8P9A_065 | 1/AR/3298:3300, 1/AR/3314:3318, 1/AR/3388:3390 | No text annotation J3_81015.1 | ||
| J3_8P9A_066 | 1/AS/9:14, 1/AS/66:67, 1/AS/111:112 | No text annotation J3_12003.2 | ||
| J3_8P9A_067 | 1/AT/44:45, 1/AT/58:64, 1/AT/96:100 | No text annotation J3_35667.2 | ||
| J3_8P9A_068 | 1/sR/41:42, 1/sR/433:439, 1/sR/464:466 | No text annotation J3_67856.4 | ||
| J3_8P9A_069 | 1/sR/41:48, 1/sR/431:439, 1/sR/464:466 | No text annotation J3_46317.4 | ||
| J3_8P9A_070 | 1/sR/213:229, 1/sR/236:243, 1/sR/250:252 | No text annotation J3_69466.1 | ||
| J3_8P9A_071 | 1/sR/633:635, 1/sR/861:865, 1/sR/965:966 | No text annotation J3_56052.5 | ||
| J3_8P9A_072 | 1/sR/633:635, 1/sR/861:866, 1/sR/962:966 | No text annotation J3_17385.4 | ||
| J3_8P9A_073 | 1/sR/760:763, 1/sR/773:775, 1/sR/785:790 | No text annotation J3_97642.1 | ||
| J3_8P9A_074 | 1/sR/881:884, 1/sR/928:936, 1/sR/943:947 | No text annotation J3_76375.1 | ||
| J3_8P9A_075 | 1/sR/1037:1039, 1/sR/1079:1083, 1/sR/1090:1094 | No text annotation J3_94999.1 | ||
| J3_8P9A_076 | 1/sR/1161:1164, 1/sR/1581:1587, 1/sR/1609:1616 | No text annotation J3_25303.4 | ||
| J3_8P9A_077 | 1/sR/1168:1171, 1/sR/1468:1470, 1/sR/1574:1577 | No text annotation J3_52655.4 | ||
| J3_8P9A_078 | 1/sR/1180:1187, 1/sR/1198:1209, 1/sR/1454:1458 | No text annotation J3_83516.4 | ||
| J3_8P9A_079 | 1/sR/1215:1220, 1/sR/1263:1267, 1/sR/1442:1448 | No text annotation J3_87797.1 | ||
| J3_8P9A_080 | 1/sR/1283:1288, 1/sR/1327:1332, 1/sR/1419:1424 | No text annotation J3_99563.1 | ||
| J3_8P9A_081 | 1/sR/1293:1294, 1/sR/1303:1306, 1/sR/1318:1322 | No text annotation J3_76043.3 | ||
| J3_8P9A_082 | 1/sR/1336:1338, 1/sR/1386:1389, 1/sR/1412:1415 | No text annotation J3_82365.4 | ||
| J3_8P9A_083 | 1/sR/1336:1338, 1/sR/1386:1391, 1/sR/1407:1415 | No text annotation J3_88233.1 | ||
| J3_8P9A_084 | 1/sR/1470:1474, 1/sR/1533:1540, 1/sR/1571:1574 | No text annotation J3_37047.6 | ||
| J4_8P9A_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8P9A_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_8P9A_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_8P9A_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_8P9A_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_8P9A_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_8P9A_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8P9A_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_8P9A_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_8P9A_010 | 1/A/99:107, 1/A/307:309, 1/A/357:361, 1/A/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_8P9A_011 | 1/A/622:624, 1/A/975:980, 1/A/1021:1032, 1/A/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_8P9A_012 | 1/AR/112:113, 1/AR/267:272, 1/AR/293:299, 1/AR/316:319 | No text annotation J4_45801.6 | ||
| J4_8P9A_013 | 1/AR/185:189, 1/AR/205:208, 1/AR/212:214, 1/AR/226:231 | No text annotation J4_12410.1 | ||
| J4_8P9A_014 | 1/AR/1451:1457, 1/AR/1475:1476, 1/AR/1877:1880, 1/AR/2352:2353 | No text annotation J4_87855.1 | ||
| J4_8P9A_015 | 1/AR/1492:1496, 1/AR/1520:1525, 1/AR/1614:1615, 1/AR/1829:1836 | No text annotation J4_69051.6 | ||
| J4_8P9A_016 | 1/AR/1674:1675, 1/AR/1693:1694, 1/AR/1752:1753, 1/AR/1772:1773 | No text annotation J4_24280.2 | ||
| J4_8P9A_017 | 1/AR/2130:2134, 1/AR/2146:2150, 1/AR/2186:2190, 1/AR/2317:2322 | No text annotation J4_07509.2 | ||
| J4_8P9A_018 | 1/AR/2192:2194, 1/AR/2248:2249, 1/AR/2267:2276, 1/AR/2310:2315 | No text annotation J4_93343.1 | ||
| J4_8P9A_019 | 1/AR/2654:2658, 1/AR/2712:2716, 1/AR/2740:2742, 1/AR/2751:2753 | No text annotation J4_04930.6 | ||
| J4_8P9A_020 | 1/AR/3010:3012, 1/AR/3042:3043, 1/AR/3098:3100, 1/AR/3134:3136 | No text annotation J4_65356.1 | ||
| J4_8P9A_021 | 1/sR/99:107, 1/sR/307:309, 1/sR/357:361, 1/sR/383:384 | No text annotation J4_15241.1 | ||
| J4_8P9A_022 | 1/sR/622:624, 1/sR/975:980, 1/sR/1021:1032, 1/sR/1103:1104 | No text annotation J4_61885.6 | ||
| J5_8P9A_001 | 1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_8P9A_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_8P9A_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_8P9A_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_8P9A_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation | ||
| J5_8P9A_006 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_8P9A_007 | 1/A/31:35, 1/A/473:483, 1/A/504:516, 1/A/536:546, 1/A/592:595 | No text annotation | ||
| J5_8P9A_008 | 1/A/54:57, 1/A/90:97, 1/A/386:388, 1/A/409:411, 1/A/422:426 | No text annotation | homologous J5_8P9A_017 J5_59910.6 | |
| J5_8P9A_019 | 1/A/636:641, 1/A/693:698, 1/A/740:744, 1/A/807:817, 1/A/854:860 | No text annotation | ||
| J5_8P9A_010 | 1/AR/20:22, 1/AT/35:42, 1/AT/102:107, 1/AT/115:116, 1/AT/137:139 | No text annotation J5_01737.2 | ||
| J5_8P9A_011 | 1/AR/658:663, 1/AR/799:802, 1/AR/941:944, 1/AR/1375:1376, 1/AR/1431:1437 | No text annotation J5_63811.1 | ||
| J5_8P9A_012 | 1/AR/675:678, 1/AR/702:706, 1/AR/713:721, 1/AR/749:751, 1/AR/782:787 | No text annotation J5_23272.1 | ||
| J5_8P9A_013 | 1/AR/1906:1914, 1/AR/1938:1939, 1/AR/2109:2110, 1/AR/2114:2122, 1/AR/2331:2333 | No text annotation J5_62523.6 | ||
| J5_8P9A_014 | 1/AR/2399:2406, 1/AR/2815:2823, 1/AR/2867:2875, 1/AR/2952:2957, 1/AR/2975:2980 | No text annotation J5_14788.1 | ||
| J5_8P9A_015 | 1/AR/2416:2419, 1/AR/2611:2614, 1/AR/2627:2628, 1/AR/2650:2651, 1/AR/2798:2804 | No text annotation J5_08912.1 | ||
| J5_8P9A_016 | 1/sR/31:35, 1/sR/473:479, 1/sR/509:516, 1/sR/536:546, 1/sR/592:595 | No text annotation J5_02492.1 | ||
| J5_8P9A_017 | 1/sR/54:57, 1/sR/90:97, 1/sR/386:388, 1/sR/409:411, 1/sR/422:426 | No text annotation J5_59910.6 | ||
| J5_8P9A_018 | 1/sR/636:641, 1/sR/693:698, 1/sR/740:744, 1/sR/807:817, 1/sR/854:860 | No text annotation J5_47977.1 | ||
| J6_8P9A_001 | 1/1/22:28, 1/1/56:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_8P9A_002 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804 | No text annotation | ||
| J6_8P9A_003 | 1/AR/22:27, 1/AR/58:68, 1/AR/75:79, 1/AR/106:110, 1/AR/321:331, 1/AT/32:35 | No text annotation J6_51798.1 | ||
| J6_8P9A_004 | 1/AR/2416:2419, 1/AR/2611:2614, 1/AR/2627:2628, 1/AR/2650:2653, 1/AR/2754:2765, 1/AR/2793:2804 | No text annotation J6_99438.1 | ||
| J7_8P9A_001 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation | ||
| J7_8P9A_002 | 1/AR/949:954, 1/AR/967:968, 1/AR/1114:1117, 1/AR/1141:1146, 1/AR/1157:1161, 1/AR/1338:1339, 1/AR/1365:1370 | No text annotation J7_22176.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8P9A_015 | No text annotation | ||
| J3_8P9A_037 | No text annotation | ||
| J3_8P9A_057 | No text annotation | ||
| J5_8P9A_009 | No text annotation |
Coloring options: