HL_8P9A_033

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCCUGAUUUUAUGCAGGCC

Length

19 nucleotides

Bulged bases

8P9A|1|1|G|1573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P9A|1|1|G|1561
8P9A|1|1|C|1562
8P9A|1|1|C|1563
8P9A|1|1|U|1564
8P9A|1|1|G|1565
8P9A|1|1|A|1566
8P9A|1|1|U|1567
8P9A|1|1|U|1568
8P9A|1|1|U|1569
8P9A|1|1|U|1570
8P9A|1|1|A|1571
8P9A|1|1|U|1572
8P9A|1|1|G|1573
8P9A|1|1|C|1574
8P9A|1|1|A|1575
8P9A|1|1|G|1576
8P9A|1|1|G|1577
8P9A|1|1|C|1578
8P9A|1|1|C|1579

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A