HL_8P9A_046

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8P9A|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_046 not in the Motif Atlas

Homologous match to HL_8P9A_158

Geometric discrepancy: 0.0617

The information below is about HL_8P9A_158

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8P9A|1|1|A|2164
8P9A|1|1|G|2165
8P9A|1|1|A|2166
8P9A|1|1|A|2167
8P9A|1|1|A|2168
8P9A|1|1|G|2169
8P9A|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A

Chain v

60S ribosomal protein L15-A