HL_8P9A_050
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 8P9A|1|1|A|2372, 8P9A|1|1|A|2373, 8P9A|1|1|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P9A_050 not in the Motif Atlas
- Homologous match to HL_8P9A_162
- Geometric discrepancy: 0.0401
- The information below is about HL_8P9A_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8P9A|1|1|G|2369
8P9A|1|1|G|2370
8P9A|1|1|G|2371
8P9A|1|1|A|2372
8P9A|1|1|A|2373
8P9A|1|1|C|2374
8P9A|1|1|G|2375
8P9A|1|1|G|2376
8P9A|1|1|G|2377
8P9A|1|1|C|2378
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L3
Coloring options: