HL_8P9A_053

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

8P9A|1|1|A|2569, 8P9A|1|1|U|2570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_053 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3173

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8P9A|1|1|C|2567
8P9A|1|1|C|2568
8P9A|1|1|A|2569
8P9A|1|1|U|2570
8P9A|1|1|U|2571
8P9A|1|1|C|2572
8P9A|1|1|G|2573
8P9A|1|1|G|2574

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A