HL_8P9A_078

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8P9A|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_078 not in the Motif Atlas

Homologous match to HL_8P4V_075

Geometric discrepancy: 0.0616

The information below is about HL_8P4V_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8P9A|1|4|G|124
8P9A|1|4|U|125
8P9A|1|4|A|126
8P9A|1|4|U|127
8P9A|1|4|U|128
8P9A|1|4|C|129

Current chains

Chain 4

5.8 ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA