HL_8P9A_093

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

8P9A|1|A|C|709, 8P9A|1|A|U|718, 8P9A|1|A|U|719, 8P9A|1|A|U|721, 8P9A|1|A|U|728, 8P9A|1|A|G|729, 8P9A|1|A|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P9A|1|A|G|703
8P9A|1|A|C|704
8P9A|1|A|U|705
8P9A|1|A|A|706
8P9A|1|A|A|707
8P9A|1|A|C|708
8P9A|1|A|C|709
8P9A|1|A|U|710
8P9A|1|A|U|711
8P9A|1|A|G|712
8P9A|1|A|A|713
8P9A|1|A|G|714
8P9A|1|A|U|715
8P9A|1|A|C|716
8P9A|1|A|C|717
8P9A|1|A|U|718
8P9A|1|A|U|719
8P9A|1|A|G|720
8P9A|1|A|U|721
8P9A|1|A|G|722
8P9A|1|A|G|723
8P9A|1|A|C|724
8P9A|1|A|U|725
8P9A|1|A|C|726
8P9A|1|A|U|727
8P9A|1|A|U|728
8P9A|1|A|G|729
8P9A|1|A|G|730
8P9A|1|A|C|731
8P9A|1|A|G|732
8P9A|1|A|A|733
8P9A|1|A|A|734
8P9A|1|A|C|735

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A