HL_8P9A_102

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_102 not in the Motif Atlas

Homologous match to HL_8C3A_216

Geometric discrepancy: 0.0617

The information below is about HL_8C3A_216

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8P9A|1|A|C|1121
8P9A|1|A|G|1122
8P9A|1|A|C|1123
8P9A|1|A|A|1124
8P9A|1|A|A|1125
8P9A|1|A|G|1126

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

Large ribosomal subunit protein eL41B

Chain AQ

60S ribosomal protein L43-A