HL_8P9A_107

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8P9A|1|A|U|1362, 8P9A|1|A|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_107 not in the Motif Atlas

Homologous match to HL_8P9A_219

Geometric discrepancy: 0.3801

The information below is about HL_8P9A_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38901.2

Basepair signature

cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

8P9A|1|A|C|1359
8P9A|1|A|A|1360
8P9A|1|A|U|1361
8P9A|1|A|U|1362
8P9A|1|A|U|1363
8P9A|1|A|G|1364

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A