HL_8P9A_143

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

8P9A|1|AR|A|1462
8P9A|1|AR|U|1463
8P9A|1|AR|G|1464
8P9A|1|AR|A|1465
8P9A|1|AR|G|1466
8P9A|1|AR|A|1467
8P9A|1|AR|A|1468
8P9A|1|AR|C|1469
8P9A|1|AR|U|1470

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L17-A

Chain CT

60S ribosomal protein L19-A

Chain DF

60S ribosomal protein L31-A