3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
8P9A|1|AR|C|1846, 8P9A|1|AR|G|1848, 8P9A|1|AR|A|1850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8P9A|1|AR|C|1844
8P9A|1|AR|G|1845
8P9A|1|AR|C|1846
8P9A|1|AR|A|1847
8P9A|1|AR|G|1848
8P9A|1|AR|C|1849
8P9A|1|AR|A|1850
8P9A|1|AR|G|1851

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CF
60S ribosomal protein L4-A
Chain CR
60S ribosomal protein L17-A
Chain DL
60S ribosomal protein L37-A
Chain DN
60S ribosomal protein L39

Coloring options:

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