HL_8P9A_161

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8P9A|1|AR|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8P9A|1|AR|U|2292
8P9A|1|AR|C|2293
8P9A|1|AR|U|2294
8P9A|1|AR|A|2295
8P9A|1|AR|A|2296
8P9A|1|AR|U|2297
8P9A|1|AR|U|2298
8P9A|1|AR|A|2299
8P9A|1|AR|G|2300

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CX

60S ribosomal protein L23-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA