HL_8P9A_171

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

8P9A|1|AR|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8P9A|1|AR|C|2776
8P9A|1|AR|G|2777
8P9A|1|AR|G|2778
8P9A|1|AR|A|2779
8P9A|1|AR|A|2780
8P9A|1|AR|U|2781
8P9A|1|AR|U|2782
8P9A|1|AR|U|2783
8P9A|1|AR|G|2784

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain DC

60S ribosomal protein L28

Chain DK

60S ribosomal protein L36-A

Chain DQ

60S ribosomal protein L42-A