HL_8P9A_199

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8P9A|1|sR|C|402, 8P9A|1|sR|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|C|393
8P9A|1|sR|C|394
8P9A|1|sR|U|395
8P9A|1|sR|G|396
8P9A|1|sR|A|397
8P9A|1|sR|G|398
8P9A|1|sR|A|399
8P9A|1|sR|A|400
8P9A|1|sR|A|401
8P9A|1|sR|C|402
8P9A|1|sR|G|403
8P9A|1|sR|G|404

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A