HL_8P9A_203

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P9A|1|sR|A|520
8P9A|1|sR|A|521
8P9A|1|sR|U|522
8P9A|1|sR|G|523
8P9A|1|sR|U|524
8P9A|1|sR|A|525
8P9A|1|sR|A|526
8P9A|1|sR|A|527
8P9A|1|sR|U|528
8P9A|1|sR|A|529
8P9A|1|sR|C|530
8P9A|1|sR|C|531
8P9A|1|sR|U|532

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A