HL_8P9A_211

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8P9A|1|sR|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8P9A|1|sR|G|997
8P9A|1|sR|A|998
8P9A|1|sR|U|999
8P9A|1|sR|C|1000
8P9A|1|sR|A|1001
8P9A|1|sR|G|1002
8P9A|1|sR|A|1003
8P9A|1|sR|U|1004
8P9A|1|sR|A|1005
8P9A|1|sR|C|1006
8P9A|1|sR|C|1007

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain c4

40S ribosomal protein S14-B

Chain d6

Small ribosomal subunit protein eS26B