HL_8P9A_221

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8P9A|1|sR|C|1501
8P9A|1|sR|G|1502
8P9A|1|sR|A|1503
8P9A|1|sR|G|1504
8P9A|1|sR|A|1505
8P9A|1|sR|G|1506

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A