HL_8P9A_230

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8P9A|1|A|U|781, 8P9A|1|A|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_230 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.5562

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

8P9A|1|A|C|777
8P9A|1|A|G|778
8P9A|1|A|U|779
8P9A|1|A|A|780
8P9A|1|A|U|781
8P9A|1|A|U|782
8P9A|1|A|G|783

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain Z

40S ribosomal protein S24-A