HL_8PEG_089

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

8PEG|1|A|U|842, 8PEG|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PEG_089 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.212

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8PEG|1|A|C|840
8PEG|1|A|C|841
8PEG|1|A|U|842
8PEG|1|A|U|843
8PEG|1|A|G|844
8PEG|1|A|A|845
8PEG|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain R

Small ribosomal subunit protein bS18

Chain Z

30S ribosomal protein S1