HL_8PEG_107

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGAGGC(H2U)GAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PEG_107 not in the Motif Atlas

Homologous match to HL_6ORD_220

Geometric discrepancy: 0.5528

The information below is about HL_6ORD_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PEG|1|X|C|12
8PEG|1|X|G|13
8PEG|1|X|A|14
8PEG|1|X|G|15
8PEG|1|X|A|16
8PEG|1|X|G|17
8PEG|1|X|G|18
8PEG|1|X|C|19
8PEG|1|X|H2U|20
8PEG|1|X|G|21
8PEG|1|X|A|22
8PEG|1|X|A|23
8PEG|1|X|G|24

Current chains

Chain X

tRNA-Ser (E-site)

Nearby chains

Chain 7

Large subunit ribosomal RNA; LSU rRNA

Chain a

Large ribosomal subunit protein uL1