HL_8PFR_007

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8PFR|1|A|G|218, 8PFR|1|A|A|219, 8PFR|1|A|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.0577

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8PFR|1|A|G|216
8PFR|1|A|U|217
8PFR|1|A|G|218
8PFR|1|A|A|219
8PFR|1|A|G|220
8PFR|1|A|A|221
8PFR|1|A|A|222
8PFR|1|A|U|223
8PFR|1|A|C|224

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LH

60S ribosomal protein L4-A

Chain QY

60S ribosomal protein L26-A