HL_8PFR_036

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8PFR|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_036 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.1183

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8PFR|1|A|G|1680
8PFR|1|A|U|1681
8PFR|1|A|U|1682
8PFR|1|A|A|1683
8PFR|1|A|U|1684
8PFR|1|A|C|1685
8PFR|1|A|U|1686
8PFR|1|A|U|1687
8PFR|1|A|U|1688

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A

Chain QU

60S ribosomal protein L22-A