HL_8PFR_037

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_037 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.078

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8PFR|1|A|G|1719
8PFR|1|A|U|1720
8PFR|1|A|U|1721
8PFR|1|A|U|1722
8PFR|1|A|A|1723
8PFR|1|A|U|1724
8PFR|1|A|C|1725

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A

Chain RT

60S ribosomal protein L43-A