HL_8PFR_060

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_060 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0989

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8PFR|1|A|C|2840
8PFR|1|A|G|2841
8PFR|1|A|U|2842
8PFR|1|A|U|2843
8PFR|1|A|C|2844
8PFR|1|A|A|2845
8PFR|1|A|U|2846
8PFR|1|A|A|2847
8PFR|1|A|G|2848

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10

Chain RO

Ubiquitin-60S ribosomal protein L40