HL_8PHJ_002
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- G(4OC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 8PHJ|1|7|U|34
- QA status
- Modified nucleotides: 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PHJ_002 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0965
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8PHJ|1|7|G|32
8PHJ|1|7|4OC|33
8PHJ|1|7|U|34
8PHJ|1|7|C|35
8PHJ|1|7|A|36
8PHJ|1|7|U|37
8PHJ|1|7|A|38
8PHJ|1|7|A|39
8PHJ|1|7|C|40
Current chains
- Chain 7
- fMet-tRNA(fMet)
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain 9
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Small ribosomal subunit protein uS9
- Chain X
- CRISPR-associated protein, APE2256 family
Coloring options: