HL_8PHJ_014

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_014 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0897

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PHJ|1|A|A|320
8PHJ|1|A|A|321
8PHJ|1|A|C|322
8PHJ|1|A|U|323
8PHJ|1|A|G|324
8PHJ|1|A|A|325
8PHJ|1|A|G|326
8PHJ|1|A|A|327
8PHJ|1|A|C|328
8PHJ|1|A|A|329
8PHJ|1|A|C|330
8PHJ|1|A|G|331
8PHJ|1|A|G|332
8PHJ|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20