HL_8PHJ_034

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_034 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.0669

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PHJ|1|A|C|1314
8PHJ|1|A|U|1315
8PHJ|1|A|G|1316
8PHJ|1|A|C|1317
8PHJ|1|A|A|1318
8PHJ|1|A|A|1319
8PHJ|1|A|C|1320
8PHJ|1|A|U|1321
8PHJ|1|A|C|1322
8PHJ|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19