HL_8PHJ_040

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8PHJ|1|a|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_040 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.0798

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8PHJ|1|a|G|123
8PHJ|1|a|G|124
8PHJ|1|a|A|125
8PHJ|1|a|A|126
8PHJ|1|a|A|127
8PHJ|1|a|C|128

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23