3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
8PHJ|1|a|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PHJ_046 not in the Motif Atlas
Homologous match to HL_7A0S_010
Geometric discrepancy: 0.0813
The information below is about HL_7A0S_010
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

8PHJ|1|a|C|305
8PHJ|1|a|U|306
8PHJ|1|a|G|307
8PHJ|1|a|G|308
8PHJ|1|a|A|309
8PHJ|1|a|A|310
8PHJ|1|a|A|311
8PHJ|1|a|G|312

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain t
Large ribosomal subunit protein uL24

Coloring options:


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