HL_8PHJ_048

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8PHJ|1|a|G|329, 8PHJ|1|a|A|330, 8PHJ|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_048 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8PHJ|1|a|G|327
8PHJ|1|a|U|328
8PHJ|1|a|G|329
8PHJ|1|a|A|330
8PHJ|1|a|C|331
8PHJ|1|a|A|332
8PHJ|1|a|G|333
8PHJ|1|a|C|334
8PHJ|1|a|C|335

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24