HL_8PHJ_052

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8PHJ|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_052 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0801

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8PHJ|1|a|C|487
8PHJ|1|a|G|488
8PHJ|1|a|G|489
8PHJ|1|a|C|490
8PHJ|1|a|G|491
8PHJ|1|a|A|492
8PHJ|1|a|G|493

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain r

Large ribosomal subunit protein uL22