HL_8PHJ_055

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8PHJ|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_055 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2083

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8PHJ|1|a|C|611
8PHJ|1|a|G|612
8PHJ|1|a|A|613
8PHJ|1|a|A|614
8PHJ|1|a|U|615
8PHJ|1|a|A|616
8PHJ|1|a|G|617

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain e

Large ribosomal subunit protein uL4