HL_8PHJ_066

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_066 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.0929

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8PHJ|1|a|C|1092
8PHJ|1|a|G|1093
8PHJ|1|a|U|1094
8PHJ|1|a|A|1095
8PHJ|1|a|A|1096
8PHJ|1|a|U|1097
8PHJ|1|a|A|1098
8PHJ|1|a|G|1099

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 6

Large ribosomal subunit protein uL11

Chain g

Large ribosomal subunit protein uL6