HL_8PHJ_082

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

8PHJ|1|a|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_082 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.133

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8PHJ|1|a|C|1806
8PHJ|1|a|G|1807
8PHJ|1|a|A|1808
8PHJ|1|a|A|1809
8PHJ|1|a|A|1810
8PHJ|1|a|G|1811

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28